CL:0000062: Difference between revisions
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|located_in= | |located_in= | ||
|name=osteoblast | |name=osteoblast | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:28, 12 September 2014
| Name: | osteoblast | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone." [MESH:A.11.329.629] | ||
| Xrefs: |
|
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000055(non-terminally differentiated cell),CL:0002320(connective tissue cell) |
|---|---|
| develops_from: | CL:0007010(preosteoblast) |
Children
| derives from: | FF:0000127 (human osteoblast-Sciencell sample),FF:0000128 (human osteoblast-Cell applications sample) |
|---|---|
| develops from: | CL:0000137 (osteocyte) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10445-106F4
- 10479-107A2
- 10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))
- 10551-107I2
- 10558-107I9 (osteosarcoma cell line:HS-Os-1)
- 10586-108D1
- 10621-108G9
- 11276-116H7 (Osteoblast - differentiated, donor1)
- 11277-116H8 (Osteoblast, donor1)
- 11353-117H3 (Osteoblast - differentiated, donor2)
... further results Mouse (Mus musculus)
- 10445-106F4
- 10479-107A2
- 10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))
- 10551-107I2
- 10558-107I9 (osteosarcoma cell line:HS-Os-1)
- 10586-108D1
- 10621-108G9
- 11276-116H7 (Osteoblast - differentiated, donor1)
- 11277-116H8 (Osteoblast, donor1)
- 11353-117H3 (Osteoblast - differentiated, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000062 (osteoblast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.65e-72 | FFCP PHASE1:Hg19::chr12:53729525..53729541,-#_9e513db8fb65fc455188ba8a8122366d | p5@SP7 |
| 6.65e-72 | FFCP PHASE1:Hg19::chr8:38470503..38470508,+#_9e513db8fb65fc455188ba8a8122366d | p@chr8:38470503..38470508, + |
| 6.65e-72 | FFCP PHASE2:Hg19::chr8:38470503..38470508,+#_9e513db8fb65fc455188ba8a8122366d | p@chr8:38470503..38470508, + |
| 6.65e-72 | FFCP PHASE2:Hg19::chr12:53729525..53729541,-#_9e513db8fb65fc455188ba8a8122366d | p5@SP7 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr6:45295874..45295877,+#_242b889baf56411e877c0dcec225e45c | p47@RUNX2 |
| 2.16e-54 | FFCP PHASE1:Hg19::chr9:116398779..116398800,+#_242b889baf56411e877c0dcec225e45c | p@chr9:116398779..116398800, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr6:155427848..155427862,+#_242b889baf56411e877c0dcec225e45c | p@chr6:155427848..155427862, + |
| 2.16e-54 | FFCP PHASE2:Hg19::chr1:199050926..199050944,-#_242b889baf56411e877c0dcec225e45c | p@chr1:199050926..199050944, - |
| 2.16e-54 | FFCP PHASE2:Hg19::chr12:53729546..53729565,-#_242b889baf56411e877c0dcec225e45c | p4@SP7 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr1:62392630..62392651,+#_242b889baf56411e877c0dcec225e45c | p@chr1:62392630..62392651, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr11:124481316..124481334,+#_242b889baf56411e877c0dcec225e45c | p1@PANX3 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr6:45296266..45296277,+#_242b889baf56411e877c0dcec225e45c | p34@RUNX2 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr6:155427848..155427862,+#_242b889baf56411e877c0dcec225e45c | p@chr6:155427848..155427862, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr6:36733583..36733590,-#_242b889baf56411e877c0dcec225e45c | p@chr6:36733583..36733590, - |
| 2.16e-54 | FFCP PHASE2:Hg19::chr9:116398779..116398800,+#_242b889baf56411e877c0dcec225e45c | p@chr9:116398779..116398800, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr6:45296391..45296400,+#_242b889baf56411e877c0dcec225e45c | p52@RUNX2 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr11:124481361..124481366,+#_242b889baf56411e877c0dcec225e45c | p2@PANX3 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr6:36733583..36733590,-#_242b889baf56411e877c0dcec225e45c | p@chr6:36733583..36733590, - |
| 2.16e-54 | FFCP PHASE1:Hg19::chr12:53729546..53729565,-#_242b889baf56411e877c0dcec225e45c | p4@SP7 |
| 2.16e-54 | FFCP PHASE1:Hg19::chr11:124481361..124481366,+#_242b889baf56411e877c0dcec225e45c | p2@PANX3 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr11:124479851..124479862,-#_242b889baf56411e877c0dcec225e45c | p@chr11:124479851..124479862, - |
| 2.16e-54 | FFCP PHASE2:Hg19::chr6:45296391..45296400,+#_242b889baf56411e877c0dcec225e45c | p52@RUNX2 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr11:124482705..124482719,+#_242b889baf56411e877c0dcec225e45c | p@chr11:124482705..124482719, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr1:77864109..77864116,+#_242b889baf56411e877c0dcec225e45c | p@chr1:77864109..77864116, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr11:124479851..124479862,-#_242b889baf56411e877c0dcec225e45c | p@chr11:124479851..124479862, - |
| 2.16e-54 | FFCP PHASE2:Hg19::chr12:91395963..91395968,-#_242b889baf56411e877c0dcec225e45c | p@chr12:91395963..91395968, - |
| 2.16e-54 | FFCP PHASE2:Hg19::chr1:77864109..77864116,+#_242b889baf56411e877c0dcec225e45c | p@chr1:77864109..77864116, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr11:124482705..124482719,+#_242b889baf56411e877c0dcec225e45c | p@chr11:124482705..124482719, + |
| 2.16e-54 | FFCP PHASE2:Hg19::chr11:124480065..124480072,-#_242b889baf56411e877c0dcec225e45c | p@chr11:124480065..124480072, - |
| 2.16e-54 | FFCP PHASE1:Hg19::chr11:124480065..124480072,-#_242b889baf56411e877c0dcec225e45c | p@chr11:124480065..124480072, - |
| 2.16e-54 | FFCP PHASE1:Hg19::chr2:37593656..37593667,+#_242b889baf56411e877c0dcec225e45c | p@chr2:37593656..37593667, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr12:91395963..91395968,-#_242b889baf56411e877c0dcec225e45c | p@chr12:91395963..91395968, - |
| 2.16e-54 | FFCP PHASE1:Hg19::chr6:36733547..36733556,-#_242b889baf56411e877c0dcec225e45c | p@chr6:36733547..36733556, - |
| 2.16e-54 | FFCP PHASE2:Hg19::chr4:88731810..88731821,+#_242b889baf56411e877c0dcec225e45c | p@chr4:88731810..88731821, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr4:88731810..88731821,+#_242b889baf56411e877c0dcec225e45c | p@chr4:88731810..88731821, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr9:72436290..72436302,-#_242b889baf56411e877c0dcec225e45c | p@chr9:72436290..72436302, - |
| 2.16e-54 | FFCP PHASE2:Hg19::chr11:124480073..124480086,-#_242b889baf56411e877c0dcec225e45c | p@chr11:124480073..124480086, - |
| 2.16e-54 | FFCP PHASE1:Hg19::chr1:62392583..62392613,+#_242b889baf56411e877c0dcec225e45c | p@chr1:62392583..62392613, + |
| 2.16e-54 | FFCP PHASE2:Hg19::chr2:37593656..37593667,+#_242b889baf56411e877c0dcec225e45c | p@chr2:37593656..37593667, + |
| 2.16e-54 | FFCP PHASE2:Hg19::chr6:36733547..36733556,-#_242b889baf56411e877c0dcec225e45c | p@chr6:36733547..36733556, - |
| 2.16e-54 | FFCP PHASE2:Hg19::chr9:72436290..72436302,-#_242b889baf56411e877c0dcec225e45c | p@chr9:72436290..72436302, - |
| 2.16e-54 | FFCP PHASE2:Hg19::chr1:62392583..62392613,+#_242b889baf56411e877c0dcec225e45c | p@chr1:62392583..62392613, + |
| 2.16e-54 | FFCP PHASE1:Hg19::chr11:124480073..124480086,-#_242b889baf56411e877c0dcec225e45c | p@chr11:124480073..124480086, - |
| 2.16e-54 | FFCP PHASE1:Hg19::chr6:45295874..45295877,+#_242b889baf56411e877c0dcec225e45c | p47@RUNX2 |
| 2.16e-54 | FFCP PHASE1:Hg19::chr1:199050926..199050944,-#_242b889baf56411e877c0dcec225e45c | p@chr1:199050926..199050944, - |
| 2.16e-54 | FFCP PHASE1:Hg19::chr6:45296266..45296277,+#_242b889baf56411e877c0dcec225e45c | p34@RUNX2 |
| 2.16e-54 | FFCP PHASE2:Hg19::chr11:124481316..124481334,+#_242b889baf56411e877c0dcec225e45c | p1@PANX3 |
| 2.16e-54 | FFCP PHASE1:Hg19::chr1:62392630..62392651,+#_242b889baf56411e877c0dcec225e45c | p@chr1:62392630..62392651, + |
| 1.03e-43 | FFCP PHASE2:Hg19::chr7:96654015..96654018,-#_9b9dbc897bb6eddeba08dc9624d43473 | p3@DLX5 |
| 1.03e-43 | FFCP PHASE1:Hg19::chr7:96654015..96654018,-#_9b9dbc897bb6eddeba08dc9624d43473 | p3@DLX5 |
| 4.07e-41 | FFCP PHASE1:Hg19::chr6:143447228..143447237,+#_0d095a4c427010ed6a1d608b78b018f8 | p16@AIG1 |
| 4.07e-41 | FFCP PHASE1:Hg19::chr16:53707116..53707125,-#_0d095a4c427010ed6a1d608b78b018f8 | p@chr16:53707116..53707125, - |
| 4.07e-41 | FFCP PHASE2:Hg19::chr6:143447228..143447237,+#_0d095a4c427010ed6a1d608b78b018f8 | p16@AIG1 |
| 4.07e-41 | FFCP PHASE1:Hg19::chr6:36733594..36733607,-#_0d095a4c427010ed6a1d608b78b018f8 | p@chr6:36733594..36733607, - |
| 4.07e-41 | FFCP PHASE2:Hg19::chr6:36733594..36733607,-#_0d095a4c427010ed6a1d608b78b018f8 | p@chr6:36733594..36733607, - |
| 4.07e-41 | FFCP PHASE2:Hg19::chr12:53721918..53721923,-#_0d095a4c427010ed6a1d608b78b018f8 | p@chr12:53721918..53721923, - |
| 4.07e-41 | FFCP PHASE1:Hg19::chr12:53721918..53721923,-#_0d095a4c427010ed6a1d608b78b018f8 | p@chr12:53721918..53721923, - |
| 4.07e-41 | FFCP PHASE2:Hg19::chr16:53707116..53707125,-#_0d095a4c427010ed6a1d608b78b018f8 | p@chr16:53707116..53707125, - |
| 4.67e-41 | FFCP PHASE1:Hg19::chr17:1932231..1932269,+#_ffa899764d3da81b8d4fa68a77a55101 | p@chr17:1932231..1932269, + |
| 4.67e-41 | FFCP PHASE2:Hg19::chr4:88732513..88732528,+#_ffa899764d3da81b8d4fa68a77a55101 | p@chr4:88732513..88732528, + |
| 4.67e-41 | FFCP PHASE1:Hg19::chr4:88732513..88732528,+#_ffa899764d3da81b8d4fa68a77a55101 | p@chr4:88732513..88732528, + |
| 4.67e-41 | FFCP PHASE2:Hg19::chr17:1932231..1932269,+#_ffa899764d3da81b8d4fa68a77a55101 | p@chr17:1932231..1932269, + |
| 5.35e-41 | FFCP PHASE1:Hg19::chr2:53859899..53859908,-#_89c022952f8fda90835e7f503950c16b | p@chr2:53859899..53859908, - |
| 5.35e-41 | FFCP PHASE2:Hg19::chr2:53859899..53859908,-#_89c022952f8fda90835e7f503950c16b | p@chr2:53859899..53859908, - |
| 6.8e-37 | FFCP PHASE2:Hg19::chr1:52116793..52116805,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr1:52116793..52116805, + |
| 6.8e-37 | FFCP PHASE2:Hg19::chr8:104215580..104215589,-#_579d13471e77cd4806a73e1c84d61bdc | p1@ENST00000523915 |
| 6.8e-37 | FFCP PHASE1:Hg19::chr7:48078148..48078160,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr7:48078148..48078160, - |
| 6.8e-37 | FFCP PHASE1:Hg19::chr8:104215580..104215589,-#_579d13471e77cd4806a73e1c84d61bdc | p1@ENST00000523915 |
| 6.8e-37 | FFCP PHASE2:Hg19::chr12:67914694..67914707,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr12:67914694..67914707, + |
| 6.8e-37 | FFCP PHASE2:Hg19::chr17:79968448..79968454,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr17:79968448..79968454, + |
| 6.8e-37 | FFCP PHASE2:Hg19::chr11:30911556..30911574,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr11:30911556..30911574, + |
| 6.8e-37 | FFCP PHASE2:Hg19::chr1:39992756..39992784,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr1:39992756..39992784, - |
| 6.8e-37 | FFCP PHASE1:Hg19::chr17:79968448..79968454,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr17:79968448..79968454, + |
| 6.8e-37 | FFCP PHASE2:Hg19::chr8:134021151..134021176,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr8:134021151..134021176, - |
| 6.8e-37 | FFCP PHASE2:Hg19::chr3:55016721..55016732,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr3:55016721..55016732, - |
| 6.8e-37 | FFCP PHASE2:Hg19::chr2:121684363..121684405,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr2:121684363..121684405, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chr4:16027038..16027047,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr4:16027038..16027047, - |
| 6.8e-37 | FFCP PHASE1:Hg19::chr19:28202519..28202528,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr19:28202519..28202528, - |
| 6.8e-37 | FFCP PHASE1:Hg19::chr9:29942099..29942136,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr9:29942099..29942136, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chr2:71791188..71791195,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr2:71791188..71791195, + |
| 6.8e-37 | FFCP PHASE2:Hg19::chr19:28248054..28248062,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr19:28248054..28248062, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chr8:134021151..134021176,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr8:134021151..134021176, - |
| 6.8e-37 | FFCP PHASE1:Hg19::chr2:121684363..121684405,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr2:121684363..121684405, + |
| 6.8e-37 | FFCP PHASE2:Hg19::chrX:58169111..58169120,-#_579d13471e77cd4806a73e1c84d61bdc | p@chrX:58169111..58169120, - |
| 6.8e-37 | FFCP PHASE1:Hg19::chr19:28145289..28145296,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr19:28145289..28145296, - |
| 6.8e-37 | FFCP PHASE1:Hg19::chr7:25370183..25370193,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr7:25370183..25370193, + |
| 6.8e-37 | FFCP PHASE2:Hg19::chr19:28198009..28198037,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr19:28198009..28198037, - |
| 6.8e-37 | FFCP PHASE1:Hg19::chr1:105493789..105493826,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr1:105493789..105493826, - |
| 6.8e-37 | FFCP PHASE2:Hg19::chr4:188536806..188536817,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr4:188536806..188536817, - |
| 6.8e-37 | FFCP PHASE1:Hg19::chr15:30360803..30360815,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr15:30360803..30360815, - |
| 6.8e-37 | FFCP PHASE2:Hg19::chr11:85416548..85416560,-#_579d13471e77cd4806a73e1c84d61bdc | p18@SYTL2 |
| 6.8e-37 | FFCP PHASE1:Hg19::chr11:30911556..30911574,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr11:30911556..30911574, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chr1:21912937..21912944,+#_579d13471e77cd4806a73e1c84d61bdc | p2@ENST00000457706 |
| 6.8e-37 | FFCP PHASE1:Hg19::chr19:28260754..28260759,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr19:28260754..28260759, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chr4:188536806..188536817,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr4:188536806..188536817, - |
| 6.8e-37 | FFCP PHASE2:Hg19::chr9:29942099..29942136,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr9:29942099..29942136, + |
| 6.8e-37 | FFCP PHASE2:Hg19::chr2:71791188..71791195,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr2:71791188..71791195, + |
| 6.8e-37 | FFCP PHASE1:Hg19::chrX:58230080..58230084,-#_579d13471e77cd4806a73e1c84d61bdc | p@chrX:58230080..58230084, - |
| 6.8e-37 | FFCP PHASE1:Hg19::chr19:28198123..28198149,+#_579d13471e77cd4806a73e1c84d61bdc | p@chr19:28198123..28198149, + |
| 6.8e-37 | FFCP PHASE2:Hg19::chr4:16027038..16027047,-#_579d13471e77cd4806a73e1c84d61bdc | p@chr4:16027038..16027047, - |
