CL:0000186: Difference between revisions
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|located_in= | |located_in= | ||
|name=myofibroblast cell | |name=myofibroblast cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:31, 12 September 2014
| Name: | myofibroblast cell |
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| Namespace: | FANTOM |
| Definition: | "An animal cell that has characteristics of both a fibroblast cell and a smooth muscle cell." [GOC:dsd, GOC:tfm, MESH:D058628, PMID:19800625, PMID:20630469] |
| Synonyms: | "MFB" EXACT [PMID:8731193] |
| Comments: | Myofibroblasts are alpha-SMA-positive, CD34-negative, CD45-negative. They are reportedly capable of secreting IL-1beta, IL-6, and TNF-alpha. |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000183(contractile cell),CL:0000548(animal cell),CL:0002371(somatic cell) |
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Children
| is a: | CL:0002576 (perineural cell) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11499-119F5 (Perineurial Cells, donor1)
- 11579-120F4 (Perineurial Cells, donor2)
- 11660-122F4
Mouse (Mus musculus)
- 11499-119F5 (Perineurial Cells, donor1)
- 11579-120F4 (Perineurial Cells, donor2)
- 11660-122F4
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000186 (myofibroblast cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results for this cluster
