CL:0001024: Difference between revisions
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|located_in= | |located_in= | ||
|name=CD34-positive, CD38-negative hematopoietic stem cell | |name=CD34-positive, CD38-negative hematopoietic stem cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:39, 12 September 2014
| Name: | CD34-positive, CD38-negative hematopoietic stem cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "CD133-positive hematopoietic stem cell is a hematopoietic stem cell that is CD34-positive, CD90-positive, and CD133-positive." [GO_REF:0000031, GOC:add, GOC:amm, GOC:tfm, PMID:10430905, PMID:11750107, PMID:16551251, PMID:20024907, PMID:9389721] | ||
| Xrefs: |
| ||
| Synonyms: | "CD133-positive hematopoietic stem cell" EXACT [PMID:16140871] | ||
| Comments: | Cell markers are associated with human hematopoietic stem cells. Originally described in the dendritic cell ontology (DC_CL:0000035)(PMID: 19243617). |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000037(hematopoietic stem cell) |
|---|
Children
| derives from: | FF:0000027 (human CD133-positive hematopoeitic stem cell sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11543-120B4
- 11623-122B3
- 11704-123B3
- 12223-129E9 (CD133+ stem cells - cord blood derived, pool1)
- 12224-129F1 (CD133+ stem cells - adult bone marrow derived, pool1)
Mouse (Mus musculus)
- 11543-120B4
- 11623-122B3
- 11704-123B3
- 12223-129E9 (CD133+ stem cells - cord blood derived, pool1)
- 12224-129F1 (CD133+ stem cells - adult bone marrow derived, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0001024 (CD34-positive, CD38-negative hematopoietic stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:233430709..233430711,+#_3633a1fbb2226a6fa01c5b1c3e81ba0c | p@chr1:233430709..233430711, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:233430709..233430711,+#_3633a1fbb2226a6fa01c5b1c3e81ba0c | p@chr1:233430709..233430711, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr5:71883899..71883903,+#_00604ee4502fd64a0b4bc4c9eb10c6fa | p@chr5:71883899..71883903, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr5:71883899..71883903,+#_00604ee4502fd64a0b4bc4c9eb10c6fa | p@chr5:71883899..71883903, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr10:27742148..27742150,+#_1366deb07a5ea46ac45fa876d69e12bc | p@chr10:27742148..27742150, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr10:27742148..27742150,+#_1366deb07a5ea46ac45fa876d69e12bc | p@chr10:27742148..27742150, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr15:78594519..78594524,-#_05254cd99738906473cc0e95f8c5f7a5 | p@chr15:78594519..78594524, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr15:78594519..78594524,-#_05254cd99738906473cc0e95f8c5f7a5 | p@chr15:78594519..78594524, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr10:73830227..73830232,-#_20d79381ab025f54796705bcc477a76f | p26@SPOCK2 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr7:142245972..142246006,-#_20d79381ab025f54796705bcc477a76f | p1@TRBV8-2 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr10:73830227..73830232,-#_20d79381ab025f54796705bcc477a76f | p26@SPOCK2 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr7:142245972..142246006,-#_20d79381ab025f54796705bcc477a76f | p1@TRBV8-2 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr19:855581..855593,+#_20d79381ab025f54796705bcc477a76f | p4@ELANE |
| 4.66e-66 | FFCP PHASE2:Hg19::chr19:855581..855593,+#_20d79381ab025f54796705bcc477a76f | p4@ELANE |
| 1.46e-50 | FFCP PHASE1:Hg19::chr6:142702634..142702638,+#_8b0fd7ba14947de3e1df4143bcd19738 | p@chr6:142702634..142702638, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr6:142702634..142702638,+#_8b0fd7ba14947de3e1df4143bcd19738 | p@chr6:142702634..142702638, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr20:3064096..3064101,-#_8b0fd7ba14947de3e1df4143bcd19738 | p@chr20:3064096..3064101, - |
| 1.46e-50 | FFCP PHASE2:Hg19::chr20:3064096..3064101,-#_8b0fd7ba14947de3e1df4143bcd19738 | p@chr20:3064096..3064101, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr10:98066533..98066541,-#_d47cbcf2331d7d20d1aa9860bfdec54d | p@chr10:98066533..98066541, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr10:98066533..98066541,-#_d47cbcf2331d7d20d1aa9860bfdec54d | p@chr10:98066533..98066541, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:78870953..78870955,+#_d47cbcf2331d7d20d1aa9860bfdec54d | p@chr12:78870953..78870955, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr14:47722173..47722192,-#_d47cbcf2331d7d20d1aa9860bfdec54d | p@chr14:47722173..47722192, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr5:61874696..61874701,+#_d47cbcf2331d7d20d1aa9860bfdec54d | p3@LRRC70 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr5:61874696..61874701,+#_d47cbcf2331d7d20d1aa9860bfdec54d | p3@LRRC70 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr14:47722173..47722192,-#_d47cbcf2331d7d20d1aa9860bfdec54d | p@chr14:47722173..47722192, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:78870953..78870955,+#_d47cbcf2331d7d20d1aa9860bfdec54d | p@chr12:78870953..78870955, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr19:21861119..21861122,-#_fda41f41404523268973b3dafe89d518 | p@chr19:21861119..21861122, - |
| 6.58e-50 | FFCP PHASE1:Hg19::chr19:21861119..21861122,-#_fda41f41404523268973b3dafe89d518 | p@chr19:21861119..21861122, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr20:3064138..3064143,-#_b226183432abffb721f9a2400015ecda | p@chr20:3064138..3064143, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr20:3064138..3064143,-#_b226183432abffb721f9a2400015ecda | p@chr20:3064138..3064143, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr5:138728827..138728838,+#_b226183432abffb721f9a2400015ecda | p@chr5:138728827..138728838, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr5:138728827..138728838,+#_b226183432abffb721f9a2400015ecda | p@chr5:138728827..138728838, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr14:106733172..106733175,+#_2db73de5a55984b328e2225982b88de4 | p1@AK126233 |
| 9.91e-41 | FFCP PHASE1:Hg19::chr20:3064148..3064164,-#_2db73de5a55984b328e2225982b88de4 | p@chr20:3064148..3064164, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr20:3064148..3064164,-#_2db73de5a55984b328e2225982b88de4 | p@chr20:3064148..3064164, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr12:7622262..7622272,-#_2db73de5a55984b328e2225982b88de4 | p@chr12:7622262..7622272, - |
| 9.91e-41 | FFCP PHASE1:Hg19::chr20:3064211..3064222,-#_2db73de5a55984b328e2225982b88de4 | p@chr20:3064211..3064222, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr20:3064211..3064222,-#_2db73de5a55984b328e2225982b88de4 | p@chr20:3064211..3064222, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr14:106733172..106733175,+#_2db73de5a55984b328e2225982b88de4 | p1@AK126233 |
| 9.91e-41 | FFCP PHASE1:Hg19::chr12:7622262..7622272,-#_2db73de5a55984b328e2225982b88de4 | p@chr12:7622262..7622272, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr14:106331806..106331813,-#_d26b70cf0438f1b3a415a6c4cd71ddac | p2@IGHD7-27 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr13:107448278..107448283,+#_d26b70cf0438f1b3a415a6c4cd71ddac | p@chr13:107448278..107448283, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr16:28914360..28914369,+#_d26b70cf0438f1b3a415a6c4cd71ddac | p@chr16:28914360..28914369, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr14:106331806..106331813,-#_d26b70cf0438f1b3a415a6c4cd71ddac | p2@IGHD7-27 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr13:107448278..107448283,+#_d26b70cf0438f1b3a415a6c4cd71ddac | p@chr13:107448278..107448283, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr16:28914360..28914369,+#_d26b70cf0438f1b3a415a6c4cd71ddac | p@chr16:28914360..28914369, + |
| 2.21e-40 | FFCP PHASE2:Hg19::chr15:99819658..99819672,+#_0707a6d443585421da0b5e23381aea10 | p@chr15:99819658..99819672, + |
| 2.21e-40 | FFCP PHASE1:Hg19::chr16:15776378..15776383,+#_0707a6d443585421da0b5e23381aea10 | p@chr16:15776378..15776383, + |
| 2.21e-40 | FFCP PHASE1:Hg19::chr15:99819658..99819672,+#_0707a6d443585421da0b5e23381aea10 | p@chr15:99819658..99819672, + |
| 2.21e-40 | FFCP PHASE2:Hg19::chr16:15776378..15776383,+#_0707a6d443585421da0b5e23381aea10 | p@chr16:15776378..15776383, + |
| 3.3e-40 | FFCP PHASE2:Hg19::chr12:69754055..69754064,+#_49f32b7de24c9c7d2ece9524d8c96155 | p@chr12:69754055..69754064, + |
| 3.3e-40 | FFCP PHASE1:Hg19::chr17:56357324..56357333,-#_49f32b7de24c9c7d2ece9524d8c96155 | p@chr17:56357324..56357333, - |
| 3.3e-40 | FFCP PHASE1:Hg19::chr12:69754055..69754064,+#_49f32b7de24c9c7d2ece9524d8c96155 | p@chr12:69754055..69754064, + |
| 3.3e-40 | FFCP PHASE2:Hg19::chr17:56357324..56357333,-#_49f32b7de24c9c7d2ece9524d8c96155 | p@chr17:56357324..56357333, - |
| 1.84e-34 | FFCP PHASE2:Hg19::chr14:56683795..56683803,+#_25a8cec4da5559800916887e18a00faf | p@chr14:56683795..56683803, + |
| 1.84e-34 | FFCP PHASE2:Hg19::chr1:214614555..214614558,-#_25a8cec4da5559800916887e18a00faf | p@chr1:214614555..214614558, - |
| 1.84e-34 | FFCP PHASE1:Hg19::chr19:24009879..24009892,+#_25a8cec4da5559800916887e18a00faf | p2@RPSAP58 |
| 1.84e-34 | FFCP PHASE2:Hg19::chr19:24009879..24009892,+#_25a8cec4da5559800916887e18a00faf | p2@RPSAP58 |
| 1.84e-34 | FFCP PHASE1:Hg19::chr14:56683795..56683803,+#_25a8cec4da5559800916887e18a00faf | p@chr14:56683795..56683803, + |
| 1.84e-34 | FFCP PHASE1:Hg19::chr1:214614555..214614558,-#_25a8cec4da5559800916887e18a00faf | p@chr1:214614555..214614558, - |
| 2.58e-34 | FFCP PHASE2:Hg19::chr4:2916272..2916283,+#_23b347ca70652005cc91f850059eb041 | p38@ADD1 |
| 2.58e-34 | FFCP PHASE1:Hg19::chr2:43424646..43424671,-#_23b347ca70652005cc91f850059eb041 | p@chr2:43424646..43424671, - |
| 2.58e-34 | FFCP PHASE1:Hg19::chr19:19972028..19972035,-#_23b347ca70652005cc91f850059eb041 | p@chr19:19972028..19972035, - |
| 2.58e-34 | FFCP PHASE2:Hg19::chr2:43424646..43424671,-#_23b347ca70652005cc91f850059eb041 | p@chr2:43424646..43424671, - |
| 2.58e-34 | FFCP PHASE2:Hg19::chr19:19972028..19972035,-#_23b347ca70652005cc91f850059eb041 | p@chr19:19972028..19972035, - |
| 2.58e-34 | FFCP PHASE1:Hg19::chr14:106332629..106332637,-#_23b347ca70652005cc91f850059eb041 | p@chr14:106332629..106332637, - |
| 2.58e-34 | FFCP PHASE1:Hg19::chr9:132807451..132807460,+#_23b347ca70652005cc91f850059eb041 | p@chr9:132807451..132807460, + |
| 2.58e-34 | FFCP PHASE2:Hg19::chr9:132807451..132807460,+#_23b347ca70652005cc91f850059eb041 | p@chr9:132807451..132807460, + |
| 2.58e-34 | FFCP PHASE1:Hg19::chr4:2916272..2916283,+#_23b347ca70652005cc91f850059eb041 | p38@ADD1 |
| 2.58e-34 | FFCP PHASE2:Hg19::chr14:106332629..106332637,-#_23b347ca70652005cc91f850059eb041 | p@chr14:106332629..106332637, - |
| 3.61e-34 | FFCP PHASE1:Hg19::chr15:50367664..50367673,-#_4e8bf1f308cb595271824fc1f2d3d949 | p@chr15:50367664..50367673, - |
| 3.61e-34 | FFCP PHASE1:Hg19::chr14:106332598..106332607,-#_4e8bf1f308cb595271824fc1f2d3d949 | p@chr14:106332598..106332607, - |
| 3.61e-34 | FFCP PHASE1:Hg19::chr1:170042665..170042670,+#_4e8bf1f308cb595271824fc1f2d3d949 | p@chr1:170042665..170042670, + |
| 3.61e-34 | FFCP PHASE2:Hg19::chr14:106332598..106332607,-#_4e8bf1f308cb595271824fc1f2d3d949 | p@chr14:106332598..106332607, - |
| 3.61e-34 | FFCP PHASE2:Hg19::chr1:170042665..170042670,+#_4e8bf1f308cb595271824fc1f2d3d949 | p@chr1:170042665..170042670, + |
| 3.61e-34 | FFCP PHASE2:Hg19::chr15:50367664..50367673,-#_4e8bf1f308cb595271824fc1f2d3d949 | p@chr15:50367664..50367673, - |
| 5.05e-34 | FFCP PHASE1:Hg19::chr6:110797642..110797655,-#_cfee92af5e3ad81d696790b2e1c81dbb | p5@SLC22A16 |
| 5.05e-34 | FFCP PHASE1:Hg19::chr3:22414302..22414311,-#_cfee92af5e3ad81d696790b2e1c81dbb | p14@ZNF385D |
| 5.05e-34 | FFCP PHASE2:Hg19::chr3:22414302..22414311,-#_cfee92af5e3ad81d696790b2e1c81dbb | p14@ZNF385D |
| 5.05e-34 | FFCP PHASE2:Hg19::chr6:110797642..110797655,-#_cfee92af5e3ad81d696790b2e1c81dbb | p5@SLC22A16 |
| 7.06e-34 | FFCP PHASE2:Hg19::chr6:156941231..156941245,-#_aa8191baaf45ec3b890a6c607cc78668 | p@chr6:156941231..156941245, - |
| 7.06e-34 | FFCP PHASE2:Hg19::chr11:67415073..67415078,-#_aa8191baaf45ec3b890a6c607cc78668 | p6@ACY3 |
| 7.06e-34 | FFCP PHASE1:Hg19::chrX:30607165..30607171,+#_aa8191baaf45ec3b890a6c607cc78668 | p@chrX:30607165..30607171, + |
| 7.06e-34 | FFCP PHASE1:Hg19::chr17:56348026..56348034,-#_aa8191baaf45ec3b890a6c607cc78668 | p@chr17:56348026..56348034, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr17:56357337..56357342,-#_aa8191baaf45ec3b890a6c607cc78668 | p@chr17:56357337..56357342, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr17:56357123..56357132,-#_aa8191baaf45ec3b890a6c607cc78668 | p@chr17:56357123..56357132, - |
| 7.06e-34 | FFCP PHASE2:Hg19::chr14:106365436..106365443,+#_aa8191baaf45ec3b890a6c607cc78668 | p@chr14:106365436..106365443, + |
| 7.06e-34 | FFCP PHASE2:Hg19::chrX:30607165..30607171,+#_aa8191baaf45ec3b890a6c607cc78668 | p@chrX:30607165..30607171, + |
| 7.06e-34 | FFCP PHASE2:Hg19::chr17:56348026..56348034,-#_aa8191baaf45ec3b890a6c607cc78668 | p@chr17:56348026..56348034, - |
| 7.06e-34 | FFCP PHASE2:Hg19::chr17:56357337..56357342,-#_aa8191baaf45ec3b890a6c607cc78668 | p@chr17:56357337..56357342, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr3:128721079..128721099,-#_aa8191baaf45ec3b890a6c607cc78668 | p@chr3:128721079..128721099, - |
| 7.06e-34 | FFCP PHASE2:Hg19::chr17:56357123..56357132,-#_aa8191baaf45ec3b890a6c607cc78668 | p@chr17:56357123..56357132, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr11:67415073..67415078,-#_aa8191baaf45ec3b890a6c607cc78668 | p6@ACY3 |
| 7.06e-34 | FFCP PHASE2:Hg19::chr3:128721079..128721099,-#_aa8191baaf45ec3b890a6c607cc78668 | p@chr3:128721079..128721099, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr6:156941231..156941245,-#_aa8191baaf45ec3b890a6c607cc78668 | p@chr6:156941231..156941245, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr14:106365436..106365443,+#_aa8191baaf45ec3b890a6c607cc78668 | p@chr14:106365436..106365443, + |
| 9.85e-34 | FFCP PHASE1:Hg19::chr3:21868304..21868313,-#_6526742abca81f11d86a43cf62fb792c | p@chr3:21868304..21868313, - |
| 9.85e-34 | FFCP PHASE1:Hg19::chr17:56353056..56353065,-#_6526742abca81f11d86a43cf62fb792c | p@chr17:56353056..56353065, - |
| 9.85e-34 | FFCP PHASE2:Hg19::chr17:56353028..56353052,-#_6526742abca81f11d86a43cf62fb792c | p@chr17:56353028..56353052, - |
| 9.85e-34 | FFCP PHASE2:Hg19::chr3:21868304..21868313,-#_6526742abca81f11d86a43cf62fb792c | p@chr3:21868304..21868313, - |
