CL:0002553: Difference between revisions
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|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=fibroblast | |name=lung fibroblast | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2011-02-28T05:11:03Z | |obo_creation_date=2011-02-28T05:11:03Z | ||
|part_of=UBERON:0002048 | |part_of=UBERON:0002048 | ||
Latest revision as of 16:44, 12 September 2014
| Name: | lung fibroblast | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A fibroblast that is part of lung." [GOC:tfm] | ||
| Xrefs: |
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| Created by: | tmeehan | ||
| Creation date: | 2011-02-28T05:11:03Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000057(fibroblast),CL_0000057() |
|---|---|
| part_of: | UBERON:0002048(lung) |
Children
| is a: | FF:10730-110B1 (non-small cell lung cancer cell line:NCI-H1385) |
|---|---|
| derives from: | FF:0000064 (human fibroblast of lung sample),FF:0100161 (lung fibroblast cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10446-106F5
- 10730-110B1 (non-small cell lung cancer cell line:NCI-H1385)
- 11270-116H1 (Fibroblast - Lung, donor1)
- 11347-117G6 (Fibroblast - Lung, donor2)
- 11419-118F6 (Fibroblast - Lung, donor3)
Mouse (Mus musculus)
- 10446-106F5
- 10730-110B1 (non-small cell lung cancer cell line:NCI-H1385)
- 11270-116H1 (Fibroblast - Lung, donor1)
- 11347-117G6 (Fibroblast - Lung, donor2)
- 11419-118F6 (Fibroblast - Lung, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002553 (lung fibroblast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE1:Hg19::chr8:13988549..13988555,+#_1f6119cd07eee58613b0c3b98b0b66f9 | p@chr8:13988549..13988555, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr18:63412228..63412270,+#_1f6119cd07eee58613b0c3b98b0b66f9 | p@chr18:63412228..63412270, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:93512357..93512364,+#_1f6119cd07eee58613b0c3b98b0b66f9 | p@chr4:93512357..93512364, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:93512357..93512364,+#_1f6119cd07eee58613b0c3b98b0b66f9 | p@chr4:93512357..93512364, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr18:63412128..63412151,+#_1f6119cd07eee58613b0c3b98b0b66f9 | p@chr18:63412128..63412151, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr8:13988549..13988555,+#_1f6119cd07eee58613b0c3b98b0b66f9 | p@chr8:13988549..13988555, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr18:63412228..63412270,+#_1f6119cd07eee58613b0c3b98b0b66f9 | p@chr18:63412228..63412270, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr18:63412128..63412151,+#_1f6119cd07eee58613b0c3b98b0b66f9 | p@chr18:63412128..63412151, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:28479346..28479352,+#_f1d55c7b75671969cd2bcbf3f2aa4fab | p@chr6:28479346..28479352, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr4:116434644..116434654,+#_f1d55c7b75671969cd2bcbf3f2aa4fab | p@chr4:116434644..116434654, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:115918789..115918795,-#_f1d55c7b75671969cd2bcbf3f2aa4fab | p3@ENST00000448663 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:246382944..246382951,-#_f1d55c7b75671969cd2bcbf3f2aa4fab | p@chr1:246382944..246382951, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr11:13809056..13809057,+#_f1d55c7b75671969cd2bcbf3f2aa4fab | p@chr11:13809056..13809057, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:115918789..115918795,-#_f1d55c7b75671969cd2bcbf3f2aa4fab | p3@ENST00000448663 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:28479346..28479352,+#_f1d55c7b75671969cd2bcbf3f2aa4fab | p@chr6:28479346..28479352, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:114449612..114449615,-#_f1d55c7b75671969cd2bcbf3f2aa4fab | p10@CSMD3 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:114449612..114449615,-#_f1d55c7b75671969cd2bcbf3f2aa4fab | p10@CSMD3 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:246382944..246382951,-#_f1d55c7b75671969cd2bcbf3f2aa4fab | p@chr1:246382944..246382951, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr4:116434644..116434654,+#_f1d55c7b75671969cd2bcbf3f2aa4fab | p@chr4:116434644..116434654, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr11:13809056..13809057,+#_f1d55c7b75671969cd2bcbf3f2aa4fab | p@chr11:13809056..13809057, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr6:18208412..18208420,+#_d6ea3cce7706220617c0ae8f951cc8c4 | p@chr6:18208412..18208420, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:22657523..22657534,+#_d6ea3cce7706220617c0ae8f951cc8c4 | p@chr10:22657523..22657534, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chrX:118161803..118161808,-#_d6ea3cce7706220617c0ae8f951cc8c4 | p@chrX:118161803..118161808, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr13:110782380..110782393,-#_d6ea3cce7706220617c0ae8f951cc8c4 | p@chr13:110782380..110782393, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr8:114449616..114449629,-#_d6ea3cce7706220617c0ae8f951cc8c4 | p3@CSMD3 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr7:157944243..157944249,-#_d6ea3cce7706220617c0ae8f951cc8c4 | p@chr7:157944243..157944249, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr10:22657489..22657502,+#_d6ea3cce7706220617c0ae8f951cc8c4 | p@chr10:22657489..22657502, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr13:110782380..110782393,-#_d6ea3cce7706220617c0ae8f951cc8c4 | p@chr13:110782380..110782393, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr6:18208412..18208420,+#_d6ea3cce7706220617c0ae8f951cc8c4 | p@chr6:18208412..18208420, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:157944243..157944249,-#_d6ea3cce7706220617c0ae8f951cc8c4 | p@chr7:157944243..157944249, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr7:25354153..25354185,+#_d6ea3cce7706220617c0ae8f951cc8c4 | p@chr7:25354153..25354185, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chrX:118161803..118161808,-#_d6ea3cce7706220617c0ae8f951cc8c4 | p@chrX:118161803..118161808, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr10:22657523..22657534,+#_d6ea3cce7706220617c0ae8f951cc8c4 | p@chr10:22657523..22657534, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:22657489..22657502,+#_d6ea3cce7706220617c0ae8f951cc8c4 | p@chr10:22657489..22657502, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr8:114449616..114449629,-#_d6ea3cce7706220617c0ae8f951cc8c4 | p3@CSMD3 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:25354153..25354185,+#_d6ea3cce7706220617c0ae8f951cc8c4 | p@chr7:25354153..25354185, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr7:1968190..1968198,-#_4859e9cc68bb844d16be3516852e2527 | p@chr7:1968190..1968198, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr18:63418785..63418796,+#_4859e9cc68bb844d16be3516852e2527 | p@chr18:63418785..63418796, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr1:239571457..239571466,+#_4859e9cc68bb844d16be3516852e2527 | p18@CHRM3 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr11:69518108..69518118,-#_4859e9cc68bb844d16be3516852e2527 | p@chr11:69518108..69518118, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr10:5407085..5407093,+#_4859e9cc68bb844d16be3516852e2527 | p5@UCN3 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr5:77683792..77683799,+#_4859e9cc68bb844d16be3516852e2527 | p@chr5:77683792..77683799, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr11:69518332..69518343,-#_4859e9cc68bb844d16be3516852e2527 | p@chr11:69518332..69518343, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr10:5407085..5407093,+#_4859e9cc68bb844d16be3516852e2527 | p5@UCN3 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr11:69518108..69518118,-#_4859e9cc68bb844d16be3516852e2527 | p@chr11:69518108..69518118, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr1:168356398..168356401,+#_4859e9cc68bb844d16be3516852e2527 | p@chr1:168356398..168356401, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr1:168356398..168356401,+#_4859e9cc68bb844d16be3516852e2527 | p@chr1:168356398..168356401, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr11:69518332..69518343,-#_4859e9cc68bb844d16be3516852e2527 | p@chr11:69518332..69518343, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr18:63418785..63418796,+#_4859e9cc68bb844d16be3516852e2527 | p@chr18:63418785..63418796, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr1:239571457..239571466,+#_4859e9cc68bb844d16be3516852e2527 | p18@CHRM3 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr17:26715557..26715559,+#_4859e9cc68bb844d16be3516852e2527 | p@chr17:26715557..26715559, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr12:57638896..57638928,-#_4859e9cc68bb844d16be3516852e2527 | p@chr12:57638896..57638928, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr19:51412411..51412426,-#_4859e9cc68bb844d16be3516852e2527 | p4@KLK4 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr7:1968190..1968198,-#_4859e9cc68bb844d16be3516852e2527 | p@chr7:1968190..1968198, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr12:57638896..57638928,-#_4859e9cc68bb844d16be3516852e2527 | p@chr12:57638896..57638928, - |
| 1.23e-66 | FFCP PHASE2:Hg19::chr5:77683792..77683799,+#_4859e9cc68bb844d16be3516852e2527 | p@chr5:77683792..77683799, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr17:26715557..26715559,+#_4859e9cc68bb844d16be3516852e2527 | p@chr17:26715557..26715559, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr19:51412411..51412426,-#_4859e9cc68bb844d16be3516852e2527 | p4@KLK4 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr18:71843159..71843180,+#_2f490eb73e496dcd6493351a092292b4 | p@chr18:71843159..71843180, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr7:1968200..1968208,-#_2f490eb73e496dcd6493351a092292b4 | p@chr7:1968200..1968208, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr1:223895346..223895353,-#_2f490eb73e496dcd6493351a092292b4 | p@chr1:223895346..223895353, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr7:100810466..100810470,+#_2f490eb73e496dcd6493351a092292b4 | p@chr7:100810466..100810470, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:3344434..3344441,+#_2f490eb73e496dcd6493351a092292b4 | p@chr4:3344434..3344441, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr22:49769903..49769910,+#_2f490eb73e496dcd6493351a092292b4 | p@chr22:49769903..49769910, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr7:15071427..15071430,-#_2f490eb73e496dcd6493351a092292b4 | p@chr7:15071427..15071430, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr7:1968200..1968208,-#_2f490eb73e496dcd6493351a092292b4 | p@chr7:1968200..1968208, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr18:72611750..72611755,+#_2f490eb73e496dcd6493351a092292b4 | p@chr18:72611750..72611755, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr6:18208425..18208436,+#_2f490eb73e496dcd6493351a092292b4 | p@chr6:18208425..18208436, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr10:5060201..5060211,-#_2f490eb73e496dcd6493351a092292b4 | p5@AKR1C2 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr7:15071427..15071430,-#_2f490eb73e496dcd6493351a092292b4 | p@chr7:15071427..15071430, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr18:71843121..71843138,+#_2f490eb73e496dcd6493351a092292b4 | p@chr18:71843121..71843138, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:116209677..116209718,+#_2f490eb73e496dcd6493351a092292b4 | p@chr4:116209677..116209718, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr12:127385138..127385144,-#_2f490eb73e496dcd6493351a092292b4 | p@chr12:127385138..127385144, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr10:5060201..5060211,-#_2f490eb73e496dcd6493351a092292b4 | p5@AKR1C2 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr18:71843159..71843180,+#_2f490eb73e496dcd6493351a092292b4 | p@chr18:71843159..71843180, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr12:127385138..127385144,-#_2f490eb73e496dcd6493351a092292b4 | p@chr12:127385138..127385144, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr18:71843121..71843138,+#_2f490eb73e496dcd6493351a092292b4 | p@chr18:71843121..71843138, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:116209677..116209718,+#_2f490eb73e496dcd6493351a092292b4 | p@chr4:116209677..116209718, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr1:223895346..223895353,-#_2f490eb73e496dcd6493351a092292b4 | p@chr1:223895346..223895353, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr18:72611750..72611755,+#_2f490eb73e496dcd6493351a092292b4 | p@chr18:72611750..72611755, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr6:18208425..18208436,+#_2f490eb73e496dcd6493351a092292b4 | p@chr6:18208425..18208436, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr7:100810466..100810470,+#_2f490eb73e496dcd6493351a092292b4 | p@chr7:100810466..100810470, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr22:49769903..49769910,+#_2f490eb73e496dcd6493351a092292b4 | p@chr22:49769903..49769910, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:3344434..3344441,+#_2f490eb73e496dcd6493351a092292b4 | p@chr4:3344434..3344441, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr12:53686428..53686432,+#_b103f3e8ef1301664003b9bcf82b06f8 | p@chr12:53686428..53686432, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr13:79169067..79169071,-#_b103f3e8ef1301664003b9bcf82b06f8 | p@chr13:79169067..79169071, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr12:53686428..53686432,+#_b103f3e8ef1301664003b9bcf82b06f8 | p@chr12:53686428..53686432, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chrX:118621021..118621027,-#_b103f3e8ef1301664003b9bcf82b06f8 | p@chrX:118621021..118621027, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:108602414..108602423,+#_b103f3e8ef1301664003b9bcf82b06f8 | p@chr2:108602414..108602423, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr13:79169067..79169071,-#_b103f3e8ef1301664003b9bcf82b06f8 | p@chr13:79169067..79169071, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr9:33719660..33719671,-#_b103f3e8ef1301664003b9bcf82b06f8 | p@chr9:33719660..33719671, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:3310694..3310716,-#_b103f3e8ef1301664003b9bcf82b06f8 | p@chr4:3310694..3310716, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr2:108746272..108746286,+#_b103f3e8ef1301664003b9bcf82b06f8 | p@chr2:108746272..108746286, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr22:49819110..49819121,-#_b103f3e8ef1301664003b9bcf82b06f8 | p5@C22orf34 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr7:44574294..44574303,-#_b103f3e8ef1301664003b9bcf82b06f8 | p@chr7:44574294..44574303, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:108602414..108602423,+#_b103f3e8ef1301664003b9bcf82b06f8 | p@chr2:108602414..108602423, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:3310694..3310716,-#_b103f3e8ef1301664003b9bcf82b06f8 | p@chr4:3310694..3310716, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr2:108746272..108746286,+#_b103f3e8ef1301664003b9bcf82b06f8 | p@chr2:108746272..108746286, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr22:49819110..49819121,-#_b103f3e8ef1301664003b9bcf82b06f8 | p5@C22orf34 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr7:44574294..44574303,-#_b103f3e8ef1301664003b9bcf82b06f8 | p@chr7:44574294..44574303, - |
