CL:0002568: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=mesenchymal stem cell of Wharton's jelly | |name=mesenchymal stem cell of Wharton's jelly | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2011-03-01T09:51:18Z | |obo_creation_date=2011-03-01T09:51:18Z | ||
|part_of= | |part_of= | ||
Latest revision as of 16:44, 12 September 2014
| Name: | mesenchymal stem cell of Wharton's jelly |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A mesenchymal stem cell that is part of Wharton's jelly." [GOC:tfm] |
| Created by: | tmeehan |
| Creation date: | 2011-03-01T09:51:18Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0002569(mesenchymal stem cell of umbilical cord) |
|---|
Children
| derives from: | FF:0000095 (human mesenchymal stem cell of Wharton's jelly sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11548-120B9 (Mesenchymal Stem Cells - Wharton's Jelly, donor1)
- 11628-122B8
Mouse (Mus musculus)
- 11548-120B9 (Mesenchymal Stem Cells - Wharton's Jelly, donor1)
- 11628-122B8
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002568 (mesenchymal stem cell of Wharton's jelly), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.23e-66 | FFCP PHASE2:Hg19::chr4:120446538..120446544,-#_3a855a789b135de778fa20dea1eb0b62 | p@chr4:120446538..120446544, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chr4:120446538..120446544,-#_3a855a789b135de778fa20dea1eb0b62 | p@chr4:120446538..120446544, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr21:16209394..16209398,-#_367e438629250f03be7b81d92cd3b22e | p@chr21:16209394..16209398, - |
| 2.42e-50 | FFCP PHASE1:Hg19::chr21:16209394..16209398,-#_367e438629250f03be7b81d92cd3b22e | p@chr21:16209394..16209398, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr13:97775142..97775154,+#_2e812960bc28ffb1276f31d67ad8a5cf | p@chr13:97775142..97775154, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr13:97775142..97775154,+#_2e812960bc28ffb1276f31d67ad8a5cf | p@chr13:97775142..97775154, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr2:232030419..232030426,+#_21e28941424b51f6157716f5e0a2d82a | p@chr2:232030419..232030426, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr2:232030419..232030426,+#_21e28941424b51f6157716f5e0a2d82a | p@chr2:232030419..232030426, + |
| 9.91e-41 | FFCP PHASE1:Hg19::chr6:75912602..75912613,-#_027e3dd405245ebc2166dc60774f49f9 | p25@COL12A1 |
| 9.91e-41 | FFCP PHASE2:Hg19::chr6:75912602..75912613,-#_027e3dd405245ebc2166dc60774f49f9 | p25@COL12A1 |
| 2.21e-40 | FFCP PHASE2:Hg19::chr10:72576503..72576516,+#_40fb720da0d3bc418f82d2d992a4065a | p11@SGPL1 |
| 2.21e-40 | FFCP PHASE1:Hg19::chr1:210612925..210612933,+#_40fb720da0d3bc418f82d2d992a4065a | p15@HHAT |
| 2.21e-40 | FFCP PHASE1:Hg19::chr10:72576503..72576516,+#_40fb720da0d3bc418f82d2d992a4065a | p11@SGPL1 |
| 2.21e-40 | FFCP PHASE2:Hg19::chr1:210612925..210612933,+#_40fb720da0d3bc418f82d2d992a4065a | p15@HHAT |
| 3.3e-40 | FFCP PHASE1:Hg19::chr21:36749984..36749990,-#_4e616664bb06286eccf663183da8dea4 | p@chr21:36749984..36749990, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr21:36749984..36749990,-#_4e616664bb06286eccf663183da8dea4 | p@chr21:36749984..36749990, - |
| 1.84e-34 | FFCP PHASE2:Hg19::chr13:28896641..28896653,-#_caaaef4965a3a888024115a9b9bd3f2e | p5@FLT1 |
| 1.84e-34 | FFCP PHASE1:Hg19::chr13:28896641..28896653,-#_caaaef4965a3a888024115a9b9bd3f2e | p5@FLT1 |
| 2.58e-34 | FFCP PHASE2:Hg19::chr3:8989081..8989115,-#_403068b9b9c68b863e30c4b8a2855cac | p@chr3:8989081..8989115, - |
| 2.58e-34 | FFCP PHASE1:Hg19::chr3:8989081..8989115,-#_403068b9b9c68b863e30c4b8a2855cac | p@chr3:8989081..8989115, - |
| 9.85e-34 | FFCP PHASE1:Hg19::chr13:29293037..29293044,-#_ecdf37bbc912b0475714b5ffa5b8aaa8 | p7@SLC46A3 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr13:29293037..29293044,-#_ecdf37bbc912b0475714b5ffa5b8aaa8 | p7@SLC46A3 |
| 9.99e-30 | FFCP PHASE2:Hg19::chr3:123383412..123383423,-#_af9966ba54946c8ece68a87c491a73d2 | p60@MYLK |
| 9.99e-30 | FFCP PHASE1:Hg19::chr4:90332350..90332360,+#_af9966ba54946c8ece68a87c491a73d2 | p@chr4:90332350..90332360, + |
| 9.99e-30 | FFCP PHASE1:Hg19::chr3:123383412..123383423,-#_af9966ba54946c8ece68a87c491a73d2 | p60@MYLK |
| 9.99e-30 | FFCP PHASE2:Hg19::chr4:90332350..90332360,+#_af9966ba54946c8ece68a87c491a73d2 | p@chr4:90332350..90332360, + |
| 2.78e-26 | FFCP PHASE2:Hg19::chr2:232030473..232030487,+#_2dd92dd95c3e4cc40df9dab8c575e43d | p@chr2:232030473..232030487, + |
| 2.78e-26 | FFCP PHASE1:Hg19::chr2:232030473..232030487,+#_2dd92dd95c3e4cc40df9dab8c575e43d | p@chr2:232030473..232030487, + |
| 5.93e-26 | FFCP PHASE2:Hg19::chr10:127738503..127738517,-#_e5dca6656029e40bd44b50af7dda978d | p@chr10:127738503..127738517, - |
| 5.93e-26 | FFCP PHASE1:Hg19::chr10:127738503..127738517,-#_e5dca6656029e40bd44b50af7dda978d | p@chr10:127738503..127738517, - |
| 7.62e-26 | FFCP PHASE1:Hg19::chr9:29213900..29213911,-#_4aacef89da6a1716222556e4895fbbd8 | p@chr9:29213900..29213911, - |
| 7.62e-26 | FFCP PHASE2:Hg19::chr9:29213900..29213911,-#_4aacef89da6a1716222556e4895fbbd8 | p@chr9:29213900..29213911, - |
| 1.26e-25 | FFCP PHASE1:Hg19::chr18:19756906..19756919,+#_bc9d5921a77cce0655e71ecd2a6a2583 | p@chr18:19756906..19756919, + |
| 1.26e-25 | FFCP PHASE2:Hg19::chr18:19756906..19756919,+#_bc9d5921a77cce0655e71ecd2a6a2583 | p@chr18:19756906..19756919, + |
| 2.1e-23 | FFCP PHASE2:Hg19::chr18:25545945..25545954,-#_a038f7d0a2fbc56185f865ef6c94d4e3 | p@chr18:25545945..25545954, - |
| 2.1e-23 | FFCP PHASE1:Hg19::chr5:81654586..81654599,+#_a038f7d0a2fbc56185f865ef6c94d4e3 | p@chr5:81654586..81654599, + |
| 2.1e-23 | FFCP PHASE1:Hg19::chr18:25545945..25545954,-#_a038f7d0a2fbc56185f865ef6c94d4e3 | p@chr18:25545945..25545954, - |
| 2.1e-23 | FFCP PHASE2:Hg19::chr5:81654586..81654599,+#_a038f7d0a2fbc56185f865ef6c94d4e3 | p@chr5:81654586..81654599, + |
| 5.13e-23 | FFCP PHASE2:Hg19::chr17:20824400..20824414,+#_ae8d29851d3225b1c499b84f10f276ff | p4@ENST00000443508 |
| 5.13e-23 | FFCP PHASE1:Hg19::chr4:157298235..157298246,-#_ae8d29851d3225b1c499b84f10f276ff | p@chr4:157298235..157298246, - |
| 5.13e-23 | FFCP PHASE1:Hg19::chr17:20824400..20824414,+#_ae8d29851d3225b1c499b84f10f276ff | p4@ENST00000443508 |
| 5.13e-23 | FFCP PHASE2:Hg19::chr4:157298235..157298246,-#_ae8d29851d3225b1c499b84f10f276ff | p@chr4:157298235..157298246, - |
| 6.4e-23 | FFCP PHASE1:Hg19::chr7:134345388..134345395,+#_1650ef6cf39043645f2fca7d5cd76cba | p7@BPGM |
| 6.4e-23 | FFCP PHASE2:Hg19::chr7:134345388..134345395,+#_1650ef6cf39043645f2fca7d5cd76cba | p7@BPGM |
| 1.53e-21 | FFCP PHASE1:Hg19::chrX:8472595..8472610,-#_fcd42226fec416ffec4443afee4b9ba9 | p@chrX:8472595..8472610, - |
| 1.53e-21 | FFCP PHASE2:Hg19::chr9:93271212..93271237,-#_fcd42226fec416ffec4443afee4b9ba9 | p@chr9:93271212..93271237, - |
| 1.53e-21 | FFCP PHASE2:Hg19::chrX:8472595..8472610,-#_fcd42226fec416ffec4443afee4b9ba9 | p@chrX:8472595..8472610, - |
| 1.53e-21 | FFCP PHASE1:Hg19::chr9:93271212..93271237,-#_fcd42226fec416ffec4443afee4b9ba9 | p@chr9:93271212..93271237, - |
| 2.82e-21 | FFCP PHASE2:Hg19::chr10:35701454..35701488,+#_c1e31c449646bcf0aefe13aadbc3ac0b | p@chr10:35701454..35701488, + |
| 2.82e-21 | FFCP PHASE1:Hg19::chr10:35701454..35701488,+#_c1e31c449646bcf0aefe13aadbc3ac0b | p@chr10:35701454..35701488, + |
| 7.72e-21 | FFCP PHASE2:Hg19::chr12:95267640..95267650,-#_9dfecf9a629d13473d465593843c85c2 | p@chr12:95267640..95267650, - |
| 7.72e-21 | FFCP PHASE1:Hg19::chr12:95267640..95267650,-#_9dfecf9a629d13473d465593843c85c2 | p@chr12:95267640..95267650, - |
| 1.3e-19 | FFCP PHASE2:Hg19::chr4:1160761..1160774,-#_672754a7d49c9f83a75d059602e4ff3d | p@chr4:1160761..1160774, - |
| 1.3e-19 | FFCP PHASE1:Hg19::chr4:1160761..1160774,-#_672754a7d49c9f83a75d059602e4ff3d | p@chr4:1160761..1160774, - |
| 1.88e-19 | FFCP PHASE2:Hg19::chr2:42161753..42161771,-#_be8a1cff6b3fee438fe594bf49fc6799 | p@chr2:42161753..42161771, - |
| 1.88e-19 | FFCP PHASE1:Hg19::chr2:42161753..42161771,-#_be8a1cff6b3fee438fe594bf49fc6799 | p@chr2:42161753..42161771, - |
| 2.25e-19 | FFCP PHASE2:Hg19::chr9:21974747..21974756,-#_0ca24a25ce302c70e06147b6328f78cf | p27@CDKN2A |
| 2.25e-19 | FFCP PHASE1:Hg19::chr2:39963869..39963884,-#_0ca24a25ce302c70e06147b6328f78cf | p@chr2:39963869..39963884, - |
| 2.25e-19 | FFCP PHASE2:Hg19::chr2:39963869..39963884,-#_0ca24a25ce302c70e06147b6328f78cf | p@chr2:39963869..39963884, - |
| 2.25e-19 | FFCP PHASE1:Hg19::chr9:21974747..21974756,-#_0ca24a25ce302c70e06147b6328f78cf | p27@CDKN2A |
| 2.71e-19 | FFCP PHASE2:Hg19::chr13:76222103..76222108,+#_ab8cd9e541ef5cc101f0f4708b2970dc | p@chr13:76222103..76222108, + |
| 2.71e-19 | FFCP PHASE1:Hg19::chr13:76222103..76222108,+#_ab8cd9e541ef5cc101f0f4708b2970dc | p@chr13:76222103..76222108, + |
| 3.91e-19 | FFCP PHASE1:Hg19::chr10:33281363..33281383,-#_8e02629aeafab0e400c1b649dbcdf2e5 | p14@ITGB1 |
| 3.91e-19 | FFCP PHASE2:Hg19::chr10:33281363..33281383,-#_8e02629aeafab0e400c1b649dbcdf2e5 | p14@ITGB1 |
| 5.62e-19 | FFCP PHASE1:Hg19::chr10:93320563..93320567,-#_7e0f7b1112fc042ba3d4f3737921f949 | p@chr10:93320563..93320567, - |
| 5.62e-19 | FFCP PHASE2:Hg19::chr9:12698542..12698573,+#_7e0f7b1112fc042ba3d4f3737921f949 | p16@TYRP1 |
| 5.62e-19 | FFCP PHASE2:Hg19::chr10:93320563..93320567,-#_7e0f7b1112fc042ba3d4f3737921f949 | p@chr10:93320563..93320567, - |
| 5.62e-19 | FFCP PHASE1:Hg19::chr9:12698542..12698573,+#_7e0f7b1112fc042ba3d4f3737921f949 | p16@TYRP1 |
| 3.16e-18 | FFCP PHASE1:Hg19::chr3:123383492..123383500,-#_3ec7c761630de3a2548c513102c8d5a7 | p57@MYLK |
| 3.16e-18 | FFCP PHASE2:Hg19::chr2:232030447..232030460,+#_3ec7c761630de3a2548c513102c8d5a7 | p@chr2:232030447..232030460, + |
| 3.16e-18 | FFCP PHASE2:Hg19::chrX:8472470..8472482,-#_3ec7c761630de3a2548c513102c8d5a7 | p@chrX:8472470..8472482, - |
| 3.16e-18 | FFCP PHASE2:Hg19::chr3:123383492..123383500,-#_3ec7c761630de3a2548c513102c8d5a7 | p57@MYLK |
| 3.16e-18 | FFCP PHASE1:Hg19::chr2:232030447..232030460,+#_3ec7c761630de3a2548c513102c8d5a7 | p@chr2:232030447..232030460, + |
| 3.16e-18 | FFCP PHASE1:Hg19::chrX:8472470..8472482,-#_3ec7c761630de3a2548c513102c8d5a7 | p@chrX:8472470..8472482, - |
| 7.37e-18 | FFCP PHASE2:Hg19::chr11:75719740..75719766,+#_42b0e57d47890a7c1bde800efa262e20 | p@chr11:75719740..75719766, + |
| 7.37e-18 | FFCP PHASE1:Hg19::chr1:206817396..206817400,+#_42b0e57d47890a7c1bde800efa262e20 | p@chr1:206817396..206817400, + |
| 7.37e-18 | FFCP PHASE1:Hg19::chr11:75719740..75719766,+#_42b0e57d47890a7c1bde800efa262e20 | p@chr11:75719740..75719766, + |
| 7.37e-18 | FFCP PHASE2:Hg19::chr1:206817396..206817400,+#_42b0e57d47890a7c1bde800efa262e20 | p@chr1:206817396..206817400, + |
| 8.72e-18 | FFCP PHASE1:Hg19::chr7:41729687..41729699,-#_6e6c07481fab12b3a604a4d796c0d6f1 | p15@INHBA |
| 8.72e-18 | FFCP PHASE2:Hg19::chr7:41729687..41729699,-#_6e6c07481fab12b3a604a4d796c0d6f1 | p15@INHBA |
| 1.44e-17 | FFCP PHASE2:Hg19::chr10:127713413..127713421,-#_2682bc08a539457ca37815a3f69cba56 | p@chr10:127713413..127713421, - |
| 1.44e-17 | FFCP PHASE1:Hg19::chr10:127713413..127713421,-#_2682bc08a539457ca37815a3f69cba56 | p@chr10:127713413..127713421, - |
| 1.7e-17 | FFCP PHASE1:Hg19::chr2:134325832..134325855,-#_954b7ff8764f48a866b49fc49e926dfb | p7@NCKAP5 |
| 1.7e-17 | FFCP PHASE2:Hg19::chr7:121713743..121713746,-#_954b7ff8764f48a866b49fc49e926dfb | p@chr7:121713743..121713746, - |
| 1.7e-17 | FFCP PHASE2:Hg19::chr2:134325832..134325855,-#_954b7ff8764f48a866b49fc49e926dfb | p7@NCKAP5 |
| 1.7e-17 | FFCP PHASE1:Hg19::chr7:121713743..121713746,-#_954b7ff8764f48a866b49fc49e926dfb | p@chr7:121713743..121713746, - |
| 5.53e-17 | FFCP PHASE2:Hg19::chr1:192735472..192735488,-#_bef487614584962c06b0bae1d2e32354 | p@chr1:192735472..192735488, - |
| 5.53e-17 | FFCP PHASE1:Hg19::chr1:192735472..192735488,-#_bef487614584962c06b0bae1d2e32354 | p@chr1:192735472..192735488, - |
| 8.86e-17 | FFCP PHASE2:Hg19::chr14:79746061..79746074,+#_6a92589d4a022b4b18d6582724753beb | p9@NRXN3 |
| 8.86e-17 | FFCP PHASE1:Hg19::chr14:79746061..79746074,+#_6a92589d4a022b4b18d6582724753beb | p9@NRXN3 |
| 1.93e-16 | FFCP PHASE1:Hg19::chr2:197143137..197143140,-#_efbba3227587e080d15ab97cf25c1a32 | p@chr2:197143137..197143140, - |
| 1.93e-16 | FFCP PHASE2:Hg19::chr2:197143137..197143140,-#_efbba3227587e080d15ab97cf25c1a32 | p@chr2:197143137..197143140, - |
| 2.25e-16 | FFCP PHASE1:Hg19::chr14:79746108..79746120,+#_865fed2551de55d50bf1457fef72f435 | p10@NRXN3 |
| 2.25e-16 | FFCP PHASE1:Hg19::chr3:133131715..133131731,-#_865fed2551de55d50bf1457fef72f435 | p2@BC040919 |
| 2.25e-16 | FFCP PHASE2:Hg19::chr14:79746108..79746120,+#_865fed2551de55d50bf1457fef72f435 | p10@NRXN3 |
| 2.25e-16 | FFCP PHASE2:Hg19::chr3:133131715..133131731,-#_865fed2551de55d50bf1457fef72f435 | p2@BC040919 |
| 3.07e-16 | FFCP PHASE2:Hg19::chr5:22560465..22560471,+#_b938bb2ce599266d2ca1d9ab3cdafb85 | p@chr5:22560465..22560471, + |
| 3.07e-16 | FFCP PHASE1:Hg19::chr5:22560465..22560471,+#_b938bb2ce599266d2ca1d9ab3cdafb85 | p@chr5:22560465..22560471, + |
| 2.38e-15 | FFCP PHASE1:Hg19::chr9:103340443..103340454,+#_eb12de81a48ff54faa822b5b72a90081 | p4@MURC |
| 2.38e-15 | FFCP PHASE2:Hg19::chr16:65159902..65159909,-#_eb12de81a48ff54faa822b5b72a90081 | p@chr16:65159902..65159909, - |
