CL:0002620: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=skin fibroblast | |name=skin fibroblast | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2011-03-14T12:31:49Z | |obo_creation_date=2011-03-14T12:31:49Z | ||
|part_of=UBERON:0002097 | |part_of=UBERON:0002097 | ||
Latest revision as of 16:46, 12 September 2014
| Name: | skin fibroblast | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A fibroblast of skin." [GOC:tfm] | ||
| Xrefs: |
| ||
| Created by: | tmeehan | ||
| Creation date: | 2011-03-14T12:31:49Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000057(fibroblast) |
|---|---|
| part_of: | UBERON:0002097(skin of body) |
Children
| is a: | CL:0002551 (fibroblast of dermis),FF:10600-108E6 (myxofibrosarcoma cell line:MFH-ino),FF:10684-109E9 (myxofibrosarcoma cell line:NMFH-1) |
|---|---|
| derives from: | FF:0000250 (human fibroblast of skin sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10600-108E6 (myxofibrosarcoma cell line:MFH-ino)
- 10684-109E9 (myxofibrosarcoma cell line:NMFH-1)
- 11269-116G9 (Fibroblast - Dermal, donor1)
- 11346-117G5 (Fibroblast - Dermal, donor2)
- 11418-118F5 (Fibroblast - Dermal, donor3)
- 11450-119A1 (Fibroblast - Dermal, donor4)
- 11454-119A5 (Fibroblast - Dermal, donor5)
- 11458-119A9 (Fibroblast - Dermal, donor6)
- 11553-120C5 (Fibroblast - skin normal, donor1)
- 11554-120C6 (Fibroblast - skin walker warburg, donor1)
... further results Mouse (Mus musculus)
- 10600-108E6 (myxofibrosarcoma cell line:MFH-ino)
- 10684-109E9 (myxofibrosarcoma cell line:NMFH-1)
- 11269-116G9 (Fibroblast - Dermal, donor1)
- 11346-117G5 (Fibroblast - Dermal, donor2)
- 11418-118F5 (Fibroblast - Dermal, donor3)
- 11450-119A1 (Fibroblast - Dermal, donor4)
- 11454-119A5 (Fibroblast - Dermal, donor5)
- 11458-119A9 (Fibroblast - Dermal, donor6)
- 11553-120C5 (Fibroblast - skin normal, donor1)
- 11554-120C6 (Fibroblast - skin walker warburg, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002620 (skin fibroblast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.28e-79 | FFCP PHASE2:Hg19::chr13:24044200..24044211,+#_69afc2362cd47caecbac35b4ed413c82 | p2@LINC00327 |
| 5.28e-79 | FFCP PHASE1:Hg19::chr13:24044200..24044211,+#_69afc2362cd47caecbac35b4ed413c82 | p2@LINC00327 |
| 8.25e-75 | FFCP PHASE2:Hg19::chr4:184271970..184271992,-#_cd8e8a4d931ee4d2f547bee29ae9a459 | p@chr4:184271970..184271992, - |
| 8.25e-75 | FFCP PHASE1:Hg19::chr4:184271970..184271992,-#_cd8e8a4d931ee4d2f547bee29ae9a459 | p@chr4:184271970..184271992, - |
| 3.0e-69 | FFCP PHASE2:Hg19::chr22:48819856..48819861,+#_b2137156d4ec73abfc39c5cea573d675 | p@chr22:48819856..48819861, + |
| 3.0e-69 | FFCP PHASE1:Hg19::chr22:48819856..48819861,+#_b2137156d4ec73abfc39c5cea573d675 | p@chr22:48819856..48819861, + |
| 1.73e-68 | FFCP PHASE2:Hg19::chr13:24044226..24044237,+#_d902ba5ca429526dffcbef1afb960859 | p1@LINC00327 |
| 1.73e-68 | FFCP PHASE1:Hg19::chr13:24044226..24044237,+#_d902ba5ca429526dffcbef1afb960859 | p1@LINC00327 |
| 2.25e-64 | FFCP PHASE1:Hg19::chr15:33180498..33180522,-#_f9ac078cc1bca3493594eed3e11b7270 | p4@FMN1 |
| 2.25e-64 | FFCP PHASE2:Hg19::chr15:33180498..33180522,-#_f9ac078cc1bca3493594eed3e11b7270 | p4@FMN1 |
| 2.96e-62 | FFCP PHASE1:Hg19::chr1:197886772..197886790,+#_b0b5a9a6b40943104228f92fc176d479 | p4@LHX9 |
| 2.96e-62 | FFCP PHASE2:Hg19::chr1:197886772..197886790,+#_b0b5a9a6b40943104228f92fc176d479 | p4@LHX9 |
| 5.44e-61 | FFCP PHASE1:Hg19::chr1:198636258..198636278,-#_8978a4c66efa2ddfcabe07d5d64f80ae | p1@ENST00000413577 |
| 5.44e-61 | FFCP PHASE2:Hg19::chr1:198636258..198636278,-#_8978a4c66efa2ddfcabe07d5d64f80ae | p1@ENST00000413577 |
| 6.11e-60 | FFCP PHASE1:Hg19::chr15:33180622..33180633,-#_f6186c532842ecfaac0dae0a397c04f2 | p13@FMN1 |
| 6.11e-60 | FFCP PHASE2:Hg19::chr15:33180622..33180633,-#_f6186c532842ecfaac0dae0a397c04f2 | p13@FMN1 |
| 1.75e-59 | FFCP PHASE1:Hg19::chr1:198636234..198636246,-#_c7732738dcaec016d870c8dd9f28df0d | p2@ENST00000413577 |
| 1.75e-59 | FFCP PHASE2:Hg19::chr1:198636234..198636246,-#_c7732738dcaec016d870c8dd9f28df0d | p2@ENST00000413577 |
| 2.81e-57 | FFCP PHASE1:Hg19::chr15:33180558..33180570,-#_c28a75961c4aae95731c5cebbfe0ad80 | p9@FMN1 |
| 2.81e-57 | FFCP PHASE2:Hg19::chr15:33180558..33180570,-#_c28a75961c4aae95731c5cebbfe0ad80 | p9@FMN1 |
| 2.16e-56 | FFCP PHASE1:Hg19::chr14:38371323..38371347,-#_7493c8669eb0c36ca97f0cda106c009e | p1@ENST00000554257, p1@uc001wuk.1 |
| 2.16e-56 | FFCP PHASE2:Hg19::chr14:38371323..38371347,-#_7493c8669eb0c36ca97f0cda106c009e | p1@ENST00000554257, p1@uc001wuk.1 |
| 4.55e-54 | FFCP PHASE2:Hg19::chr1:197886421..197886432,+#_4f7c584d9e862267162b1ef34b4753b0 | p2@LHX9 |
| 4.55e-54 | FFCP PHASE1:Hg19::chr1:197886421..197886432,+#_4f7c584d9e862267162b1ef34b4753b0 | p2@LHX9 |
| 1.36e-53 | FFCP PHASE2:Hg19::chr14:32963433..32963487,+#_c953bf70d92f8a474143de9870054b04 | p4@AKAP6 |
| 1.36e-53 | FFCP PHASE1:Hg19::chr14:32963433..32963487,+#_c953bf70d92f8a474143de9870054b04 | p4@AKAP6 |
| 1.37e-52 | FFCP PHASE1:Hg19::chr1:198636401..198636419,-#_c570acd66874668ecccc5c4b0cd4e4d1 | p3@ENST00000413577 |
| 1.37e-52 | FFCP PHASE2:Hg19::chr1:198636401..198636419,-#_c570acd66874668ecccc5c4b0cd4e4d1 | p3@ENST00000413577 |
| 5.26e-49 | FFCP PHASE1:Hg19::chr12:88813132..88813143,-#_56d09f05117b8118ff98c3197af05fef | p@chr12:88813132..88813143, - |
| 5.26e-49 | FFCP PHASE2:Hg19::chr12:88813132..88813143,-#_56d09f05117b8118ff98c3197af05fef | p@chr12:88813132..88813143, - |
| 7.25e-49 | FFCP PHASE2:Hg19::chr1:197886646..197886657,+#_1cd0258c217401b843e0ad72f2f97396 | p5@LHX9 |
| 7.25e-49 | FFCP PHASE1:Hg19::chr1:197886646..197886657,+#_1cd0258c217401b843e0ad72f2f97396 | p5@LHX9 |
| 8.98e-46 | FFCP PHASE2:Hg19::chr6:140893217..140893243,-#_bf35dbb9eb6141f914b3bddba9cfad04 | p@chr6:140893217..140893243, - |
| 8.98e-46 | FFCP PHASE1:Hg19::chr6:140893217..140893243,-#_bf35dbb9eb6141f914b3bddba9cfad04 | p@chr6:140893217..140893243, - |
| 3.79e-45 | FFCP PHASE2:Hg19::chr5:167087144..167087148,-#_8ae8414b1dfd3401f8aa89b3633f03ef | p1@ENST00000522956 |
| 3.79e-45 | FFCP PHASE1:Hg19::chr5:167087144..167087148,-#_8ae8414b1dfd3401f8aa89b3633f03ef | p1@ENST00000522956 |
| 2.97e-44 | FFCP PHASE2:Hg19::chr3:58021410..58021424,+#_8aeb73aefc29f37a787af1072c3da5ac | p@chr3:58021410..58021424, + |
| 2.97e-44 | FFCP PHASE1:Hg19::chr3:58021410..58021424,+#_8aeb73aefc29f37a787af1072c3da5ac | p@chr3:58021410..58021424, + |
| 1.0e-42 | FFCP PHASE2:Hg19::chr21:28336890..28336913,-#_2111c8b682f7ad59a124dc4d3000ad86 | p@chr21:28336890..28336913, - |
| 1.0e-42 | FFCP PHASE1:Hg19::chr21:28336890..28336913,-#_2111c8b682f7ad59a124dc4d3000ad86 | p@chr21:28336890..28336913, - |
| 1.22e-42 | FFCP PHASE2:Hg19::chr1:115782479..115782490,+#_c749acfcae969b7da29577b63e40cdf5 | p@chr1:115782479..115782490, + |
| 1.22e-42 | FFCP PHASE1:Hg19::chr1:115782479..115782490,+#_c749acfcae969b7da29577b63e40cdf5 | p@chr1:115782479..115782490, + |
| 1.99e-42 | FFCP PHASE2:Hg19::chr6:113697400..113697411,-#_97dadb064a408429d36f71e4b6314f62 | p@chr6:113697400..113697411, - |
| 1.99e-42 | FFCP PHASE1:Hg19::chr6:113697400..113697411,-#_97dadb064a408429d36f71e4b6314f62 | p@chr6:113697400..113697411, - |
| 2.44e-42 | FFCP PHASE2:Hg19::chr1:197886665..197886732,+#_0c2fc39607609f025da789e390f82381 | p3@LHX9 |
| 2.44e-42 | FFCP PHASE1:Hg19::chr1:197886665..197886732,+#_0c2fc39607609f025da789e390f82381 | p3@LHX9 |
| 2.91e-42 | FFCP PHASE2:Hg19::chr8:23564380..23564391,+#_520414c9276135e7228357afd8136b30 | p1@ENST00000523874 |
| 2.91e-42 | FFCP PHASE1:Hg19::chr8:23564380..23564391,+#_520414c9276135e7228357afd8136b30 | p1@ENST00000523874 |
| 2.41e-40 | FFCP PHASE1:Hg19::chr17:1936721..1936751,+#_b0982d3b72cfa8c5931aa914d64142c8 | p3@DPH1 |
| 2.41e-40 | FFCP PHASE2:Hg19::chr17:1936721..1936751,+#_b0982d3b72cfa8c5931aa914d64142c8 | p3@DPH1 |
| 1.09e-39 | FFCP PHASE2:Hg19::chr6:113697548..113697566,-#_5582a90f4a40af6b9a7f7947fccfbc23 | p@chr6:113697548..113697566, - |
| 1.09e-39 | FFCP PHASE1:Hg19::chr6:113697548..113697566,-#_5582a90f4a40af6b9a7f7947fccfbc23 | p@chr6:113697548..113697566, - |
| 1.11e-38 | FFCP PHASE2:Hg19::chr5:167181769..167181798,+#_16018e8b0f0d1fa1016651cad49e903e | p17@ODZ2 |
| 1.11e-38 | FFCP PHASE1:Hg19::chr5:167181769..167181798,+#_16018e8b0f0d1fa1016651cad49e903e | p17@ODZ2 |
| 2.23e-38 | FFCP PHASE2:Hg19::chr2:239778648..239778664,+#_1aaf30f0667990e5d86fa4f6d3bba673 | p@chr2:239778648..239778664, + |
| 2.23e-38 | FFCP PHASE1:Hg19::chr2:239778648..239778664,+#_1aaf30f0667990e5d86fa4f6d3bba673 | p@chr2:239778648..239778664, + |
| 2.45e-38 | FFCP PHASE1:Hg19::chr18:52969844..52969895,-#_d91689a2f8c92d7b9e80817ddcce6f04 | p27@TCF4 |
| 2.45e-38 | FFCP PHASE2:Hg19::chr18:52969844..52969895,-#_d91689a2f8c92d7b9e80817ddcce6f04 | p27@TCF4 |
| 2.79e-38 | FFCP PHASE2:Hg19::chr12:51986236..51986261,-#_d9b8defca948366a8339cbb4687387de | p@chr12:51986236..51986261, - |
| 2.79e-38 | FFCP PHASE1:Hg19::chr12:51986236..51986261,-#_d9b8defca948366a8339cbb4687387de | p@chr12:51986236..51986261, - |
| 4.55e-38 | FFCP PHASE1:Hg19::chr1:197889151..197889159,+#_2c9a4fd4fe2d3126a49745e3756700ff | p@chr1:197889151..197889159, + |
| 4.55e-38 | FFCP PHASE2:Hg19::chr1:197889151..197889159,+#_2c9a4fd4fe2d3126a49745e3756700ff | p@chr1:197889151..197889159, + |
| 6.71e-38 | FFCP PHASE2:Hg19::chr5:167148342..167148357,+#_ca4c98027ab9d92e8b66b134e1c52d66 | p1@ENST00000517346 |
| 6.71e-38 | FFCP PHASE1:Hg19::chr5:167148342..167148357,+#_ca4c98027ab9d92e8b66b134e1c52d66 | p1@ENST00000517346 |
| 7.92e-38 | FFCP PHASE2:Hg19::chr2:36784074..36784084,-#_ffd70640dbbbfebd12a948c7fcd57baa | p@chr2:36784074..36784084, - |
| 7.92e-38 | FFCP PHASE1:Hg19::chr2:36784074..36784084,-#_ffd70640dbbbfebd12a948c7fcd57baa | p@chr2:36784074..36784084, - |
| 1.37e-37 | FFCP PHASE2:Hg19::chr7:84122019..84122030,-#_e16fecf353bc522a2fdd00bc28a7cd77 | p18@SEMA3A |
| 1.37e-37 | FFCP PHASE1:Hg19::chr7:84122019..84122030,-#_e16fecf353bc522a2fdd00bc28a7cd77 | p18@SEMA3A |
| 4.82e-37 | FFCP PHASE2:Hg19::chr7:84121947..84121959,-#_d746fb8c7beef84e3bf5779e87903871 | p12@SEMA3A |
| 4.82e-37 | FFCP PHASE1:Hg19::chr7:84121947..84121959,-#_d746fb8c7beef84e3bf5779e87903871 | p12@SEMA3A |
| 7.5e-37 | FFCP PHASE2:Hg19::chr6:140985056..140985096,-#_47aaf88e53509cfce95695be288e6ec9 | p@chr6:140985056..140985096, - |
| 7.5e-37 | FFCP PHASE1:Hg19::chr6:140985056..140985096,-#_47aaf88e53509cfce95695be288e6ec9 | p@chr6:140985056..140985096, - |
| 3.48e-36 | FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_701b99e97742ccb3becb05bf50d0bac3 | p12@FBN2 |
| 3.48e-36 | FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_701b99e97742ccb3becb05bf50d0bac3 | p12@FBN2 |
| 4.93e-36 | FFCP PHASE1:Hg19::chr9:132472174..132472192,+#_8e7124899f4cedb184d813bad9ab5091 | p@chr9:132472174..132472192, + |
| 4.93e-36 | FFCP PHASE2:Hg19::chr9:132472174..132472192,+#_8e7124899f4cedb184d813bad9ab5091 | p@chr9:132472174..132472192, + |
| 5.38e-36 | FFCP PHASE1:Hg19::chr12:88801610..88801614,-#_77ca711afa49f2cbcf4ac81561145603 | p@chr12:88801610..88801614, - |
| 5.38e-36 | FFCP PHASE2:Hg19::chr12:88801610..88801614,-#_77ca711afa49f2cbcf4ac81561145603 | p@chr12:88801610..88801614, - |
| 6.14e-36 | FFCP PHASE1:Hg19::chr19:43690649..43690663,-#_507ebea4dac706786ca541444475579d | p2@PSG5 |
| 6.14e-36 | FFCP PHASE2:Hg19::chr19:43690649..43690663,-#_507ebea4dac706786ca541444475579d | p2@PSG5 |
| 6.47e-36 | FFCP PHASE1:Hg19::chr1:240256439..240256449,-#_2fed3581c12e17157ee2c7a59c7f951b | p@chr1:240256439..240256449, - |
| 6.47e-36 | FFCP PHASE2:Hg19::chr1:240256439..240256449,-#_2fed3581c12e17157ee2c7a59c7f951b | p@chr1:240256439..240256449, - |
| 1.33e-35 | FFCP PHASE2:Hg19::chr1:240448610..240448624,+#_dc28cd5b99edadcd55d944507297a01d | p@chr1:240448610..240448624, + |
| 1.33e-35 | FFCP PHASE1:Hg19::chr1:240448610..240448624,+#_dc28cd5b99edadcd55d944507297a01d | p@chr1:240448610..240448624, + |
| 1.4e-35 | FFCP PHASE2:Hg19::chr12:88813089..88813098,-#_ef11bf1f117cfe02e0a394cda0aa13c0 | p@chr12:88813089..88813098, - |
| 1.4e-35 | FFCP PHASE1:Hg19::chr12:88813089..88813098,-#_ef11bf1f117cfe02e0a394cda0aa13c0 | p@chr12:88813089..88813098, - |
| 1.9e-35 | FFCP PHASE1:Hg19::chr18:52969674..52969685,-#_e9de429d3eed22246d7f7f87f9c15599 | p24@TCF4 |
| 1.9e-35 | FFCP PHASE2:Hg19::chr18:52969674..52969685,-#_e9de429d3eed22246d7f7f87f9c15599 | p24@TCF4 |
| 2.59e-35 | FFCP PHASE2:Hg19::chr11:26210383..26210402,+#_141453d787595b7ce6c7325fda9d87f6 | p2@ENST00000531798 |
| 2.59e-35 | FFCP PHASE1:Hg19::chr11:26210383..26210402,+#_141453d787595b7ce6c7325fda9d87f6 | p2@ENST00000531798 |
| 4.99e-35 | FFCP PHASE2:Hg19::chr9:81628797..81628811,+#_84d4b40b97b8da6eced55622a6d00dfb | p@chr9:81628797..81628811, + |
| 4.99e-35 | FFCP PHASE1:Hg19::chr9:81628797..81628811,+#_84d4b40b97b8da6eced55622a6d00dfb | p@chr9:81628797..81628811, + |
| 5.16e-35 | FFCP PHASE1:Hg19::chr15:33180439..33180446,-#_a45b57ab60b5c7de72ef440967eff552 | p@chr15:33180439..33180446, - |
| 5.16e-35 | FFCP PHASE2:Hg19::chr15:33180439..33180446,-#_a45b57ab60b5c7de72ef440967eff552 | p@chr15:33180439..33180446, - |
| 8.83e-35 | FFCP PHASE2:Hg19::chr4:127876558..127876592,-#_4608ae14af56fa251a349b97372df9f5 | p1@ENST00000515428 |
| 8.83e-35 | FFCP PHASE1:Hg19::chr4:127876558..127876592,-#_4608ae14af56fa251a349b97372df9f5 | p1@ENST00000515428 |
| 1.85e-34 | FFCP PHASE2:Hg19::chr8:19171231..19171238,+#_c7bac506568a3163efbac96c07e72a54 | p7@SH2D4A |
| 1.85e-34 | FFCP PHASE1:Hg19::chr8:19171231..19171238,+#_c7bac506568a3163efbac96c07e72a54 | p7@SH2D4A |
| 2.29e-34 | FFCP PHASE2:Hg19::chr11:121972578..121972593,-#_401ae3ac1835f350349dc8815c9ee6f9 | p3@ENST00000530955 |
| 2.29e-34 | FFCP PHASE1:Hg19::chr11:121972578..121972593,-#_401ae3ac1835f350349dc8815c9ee6f9 | p3@ENST00000530955 |
