DOID:3093: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=nervous system cancer | |name=nervous system cancer | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:50, 12 September 2014
| Name: | nervous system cancer | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "An organ system cancer located_in the nervous sytem that affects the central or peripheral nervous system." [url:http://emedicine.medscape.com/oncology, url:http://en.wikipedia.org/wiki/Nervous_system_disease] | ||
| Xrefs: |
| ||
| Synonyms: |
"malignant neoplasm of nervous system" EXACT [] "neoplasm of nervous system (disorder)" EXACT [SNOMEDCT_2005_07_31:126950007] "nervous system neoplasm" EXACT [CSP2005:2012-5157] "neural neoplasm" EXACT [] "neural tumor" EXACT [NCI2004_11_17:C35562] "tumor of the nervous system" EXACT [NCI2004_11_17:C3268] | ||
| Alt_id: |
DOID:1193 DOID:3195 DOID:4695 |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:0050686(organ system cancer) |
|---|
Children
| is a: | DOID:0060116 (sensory system cancer),DOID:1192 (peripheral nervous system neoplasm),DOID:3620 (central nervous system cancer) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10413-106B8 (glioma cell line:GI-1)
- 10425-106D2 (astrocytoma cell line:TM-31)
- 10440-106E8
- 10444-106F3 (glioblastoma cell line:A172)
- 10456-106G6
- 10460-106H1
- 10475-106I7 (retinoblastoma cell line:Y79)
- 10485-107A8 (glioblastoma cell line:T98G)
- 10585-108C9
- 10669-109D3
... further results Mouse (Mus musculus)
- 10413-106B8 (glioma cell line:GI-1)
- 10425-106D2 (astrocytoma cell line:TM-31)
- 10440-106E8
- 10444-106F3 (glioblastoma cell line:A172)
- 10456-106G6
- 10460-106H1
- 10475-106I7 (retinoblastoma cell line:Y79)
- 10485-107A8 (glioblastoma cell line:T98G)
- 10585-108C9
- 10669-109D3
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3093 (nervous system cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.59e-50 | FFCP PHASE2:Hg19::chr15:36653779..36653789,-#_621b95e2aa6d0e3ab8a57a7eb86f4f0c | p@chr15:36653779..36653789, - |
| 5.59e-50 | FFCP PHASE1:Hg19::chr15:36653779..36653789,-#_621b95e2aa6d0e3ab8a57a7eb86f4f0c | p@chr15:36653779..36653789, - |
| 2.27e-44 | FFCP PHASE1:Hg19::chr7:3284005..3284016,-#_81e229f4ee7d37f6d129b14cdb1afc71 | p@chr7:3284005..3284016, - |
| 2.27e-44 | FFCP PHASE2:Hg19::chr7:3284005..3284016,-#_81e229f4ee7d37f6d129b14cdb1afc71 | p@chr7:3284005..3284016, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr10:28491892..28491902,-#_92a5e8f62c80dbda07a388cb0774a743 | p7@MPP7 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr21:26714477..26714509,+#_92a5e8f62c80dbda07a388cb0774a743 | p@chr21:26714477..26714509, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr18:38529571..38529575,+#_92a5e8f62c80dbda07a388cb0774a743 | p@chr18:38529571..38529575, + |
| 5.98e-34 | FFCP PHASE2:Hg19::chr21:26714477..26714509,+#_92a5e8f62c80dbda07a388cb0774a743 | p@chr21:26714477..26714509, + |
| 5.98e-34 | FFCP PHASE2:Hg19::chr10:54329365..54329373,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:54329365..54329373, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr10:28030013..28030015,+#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:28030013..28030015, + |
| 5.98e-34 | FFCP PHASE2:Hg19::chr18:70417659..70417666,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr18:70417659..70417666, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr10:28530831..28530841,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:28530831..28530841, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr5:24160807..24160831,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr5:24160807..24160831, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr5:24160807..24160831,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr5:24160807..24160831, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr4:39344546..39344551,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr4:39344546..39344551, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr4:39344546..39344551,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr4:39344546..39344551, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr10:28509658..28509676,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:28509658..28509676, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr18:39739175..39739186,+#_92a5e8f62c80dbda07a388cb0774a743 | p@chr18:39739175..39739186, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr10:54329365..54329373,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:54329365..54329373, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr4:176749234..176749238,+#_92a5e8f62c80dbda07a388cb0774a743 | p@chr4:176749234..176749238, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr10:28530831..28530841,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:28530831..28530841, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr18:70417486..70417495,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr18:70417486..70417495, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr4:176749234..176749238,+#_92a5e8f62c80dbda07a388cb0774a743 | p@chr4:176749234..176749238, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr7:69819605..69819617,+#_92a5e8f62c80dbda07a388cb0774a743 | p@chr7:69819605..69819617, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr18:39041105..39041117,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr18:39041105..39041117, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr7:69819605..69819617,+#_92a5e8f62c80dbda07a388cb0774a743 | p@chr7:69819605..69819617, + |
| 5.98e-34 | FFCP PHASE2:Hg19::chr18:38529571..38529575,+#_92a5e8f62c80dbda07a388cb0774a743 | p@chr18:38529571..38529575, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr18:70417551..70417561,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr18:70417551..70417561, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr10:54329394..54329397,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:54329394..54329397, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr18:70423377..70423388,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr18:70423377..70423388, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr4:39344555..39344565,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr4:39344555..39344565, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr4:39344555..39344565,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr4:39344555..39344565, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr18:39739223..39739238,+#_92a5e8f62c80dbda07a388cb0774a743 | p@chr18:39739223..39739238, + |
| 5.98e-34 | FFCP PHASE2:Hg19::chr18:39739175..39739186,+#_92a5e8f62c80dbda07a388cb0774a743 | p@chr18:39739175..39739186, + |
| 5.98e-34 | FFCP PHASE2:Hg19::chr10:28033640..28033643,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:28033640..28033643, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr10:54329394..54329397,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:54329394..54329397, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr4:176749383..176749408,+#_92a5e8f62c80dbda07a388cb0774a743 | p@chr4:176749383..176749408, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr1:198636194..198636203,-#_92a5e8f62c80dbda07a388cb0774a743 | p4@ENST00000413577 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr1:198636194..198636203,-#_92a5e8f62c80dbda07a388cb0774a743 | p4@ENST00000413577 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr10:28527477..28527523,+#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:28527477..28527523, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr4:176749383..176749408,+#_92a5e8f62c80dbda07a388cb0774a743 | p@chr4:176749383..176749408, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr18:39766598..39766611,+#_92a5e8f62c80dbda07a388cb0774a743 | p2@uc002las.1, p2@uc002lat.2, p2@uc002lau.2 |
| 5.98e-34 | FFCP PHASE1:Hg19::chrY:3781821..3781829,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chrY:3781821..3781829, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chrY:3781821..3781829,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chrY:3781821..3781829, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr18:39041105..39041117,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr18:39041105..39041117, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr5:103227130..103227137,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr5:103227130..103227137, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr18:70417646..70417651,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr18:70417646..70417651, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr5:103227130..103227137,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr5:103227130..103227137, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr10:54329422..54329434,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:54329422..54329434, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr10:28033640..28033643,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:28033640..28033643, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr4:176729849..176729872,+#_92a5e8f62c80dbda07a388cb0774a743 | p@chr4:176729849..176729872, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr10:28527477..28527523,+#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:28527477..28527523, + |
| 5.98e-34 | FFCP PHASE2:Hg19::chr10:28509539..28509568,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:28509539..28509568, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr4:176729849..176729872,+#_92a5e8f62c80dbda07a388cb0774a743 | p@chr4:176729849..176729872, + |
| 5.98e-34 | FFCP PHASE2:Hg19::chr18:39739223..39739238,+#_92a5e8f62c80dbda07a388cb0774a743 | p@chr18:39739223..39739238, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr18:38446239..38446249,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr18:38446239..38446249, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr10:54329422..54329434,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:54329422..54329434, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr18:70417551..70417561,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr18:70417551..70417561, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr10:28527860..28527872,-#_92a5e8f62c80dbda07a388cb0774a743 | p9@MPP7 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr10:28509539..28509568,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:28509539..28509568, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr18:39766598..39766611,+#_92a5e8f62c80dbda07a388cb0774a743 | p2@uc002las.1, p2@uc002lat.2, p2@uc002lau.2 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr10:28488010..28488022,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:28488010..28488022, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr5:103227146..103227159,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr5:103227146..103227159, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr18:70417659..70417666,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr18:70417659..70417666, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr5:103227146..103227159,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr5:103227146..103227159, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr3:130648803..130648811,-#_92a5e8f62c80dbda07a388cb0774a743 | p2@ENST00000504737 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr3:130648803..130648811,-#_92a5e8f62c80dbda07a388cb0774a743 | p2@ENST00000504737 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr10:54329447..54329454,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:54329447..54329454, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr10:28527860..28527872,-#_92a5e8f62c80dbda07a388cb0774a743 | p9@MPP7 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr10:28509632..28509637,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:28509632..28509637, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr10:28488010..28488022,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:28488010..28488022, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr18:38446239..38446249,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr18:38446239..38446249, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr18:70417486..70417495,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr18:70417486..70417495, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr10:54329447..54329454,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:54329447..54329454, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr10:54329319..54329326,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:54329319..54329326, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr18:70417646..70417651,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr18:70417646..70417651, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr10:28530804..28530813,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:28530804..28530813, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr4:39344493..39344497,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr4:39344493..39344497, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr4:39344493..39344497,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr4:39344493..39344497, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr10:28509632..28509637,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:28509632..28509637, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr10:28491892..28491902,-#_92a5e8f62c80dbda07a388cb0774a743 | p7@MPP7 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr5:103248950..103248994,+#_92a5e8f62c80dbda07a388cb0774a743 | p@chr5:103248950..103248994, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr18:70423377..70423388,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr18:70423377..70423388, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr5:103248950..103248994,+#_92a5e8f62c80dbda07a388cb0774a743 | p@chr5:103248950..103248994, + |
| 5.98e-34 | FFCP PHASE2:Hg19::chr10:28030013..28030015,+#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:28030013..28030015, + |
| 5.98e-34 | FFCP PHASE1:Hg19::chr10:54329319..54329326,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:54329319..54329326, - |
| 5.98e-34 | FFCP PHASE1:Hg19::chr10:28530804..28530813,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:28530804..28530813, - |
| 5.98e-34 | FFCP PHASE2:Hg19::chr10:28509658..28509676,-#_92a5e8f62c80dbda07a388cb0774a743 | p@chr10:28509658..28509676, - |
| 2.01e-30 | FFCP PHASE2:Hg19::chr10:28367310..28367318,+#_d0adcd01f0bc12fb7c706b1d5605579d | p@chr10:28367310..28367318, + |
| 2.01e-30 | FFCP PHASE1:Hg19::chr10:28367310..28367318,+#_d0adcd01f0bc12fb7c706b1d5605579d | p@chr10:28367310..28367318, + |
| 2.22e-30 | FFCP PHASE2:Hg19::chr11:103489520..103489526,+#_e4e595f22cb7ecccf1f43588711ab6f9 | p@chr11:103489520..103489526, + |
| 2.22e-30 | FFCP PHASE1:Hg19::chr11:103489520..103489526,+#_e4e595f22cb7ecccf1f43588711ab6f9 | p@chr11:103489520..103489526, + |
| 6.82e-30 | FFCP PHASE2:Hg19::chr17:13444894..13444917,+#_57356e76c963553487a9b50758fe739f | p@chr17:13444894..13444917, + |
| 6.82e-30 | FFCP PHASE1:Hg19::chr17:13444894..13444917,+#_57356e76c963553487a9b50758fe739f | p@chr17:13444894..13444917, + |
| 1.06e-29 | FFCP PHASE1:Hg19::chr20:4450781..4450802,-#_5e7cf8cd38acfd6387f8e018d6cd4f25 | p@chr20:4450781..4450802, - |
| 1.06e-29 | FFCP PHASE2:Hg19::chr20:4450781..4450802,-#_5e7cf8cd38acfd6387f8e018d6cd4f25 | p@chr20:4450781..4450802, - |
| 1.66e-25 | FFCP PHASE1:Hg19::chr15:36653709..36653720,-#_8f641385210b6f31092fdcf2c8e9f56e | p@chr15:36653709..36653720, - |
| 1.66e-25 | FFCP PHASE2:Hg19::chr15:36653709..36653720,-#_8f641385210b6f31092fdcf2c8e9f56e | p@chr15:36653709..36653720, - |
| 1.81e-25 | FFCP PHASE2:Hg19::chr10:28367270..28367278,+#_8e9da5ef5308dbac264dd3fa1e7f9d4e | p@chr10:28367270..28367278, + |
| 1.81e-25 | FFCP PHASE1:Hg19::chr10:28367270..28367278,+#_8e9da5ef5308dbac264dd3fa1e7f9d4e | p@chr10:28367270..28367278, + |
