UBERON:0001987: Difference between revisions
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|located_in= | |located_in= | ||
|name=placenta | |name=placenta | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000474;;UBERON:0016887 | |part_of=UBERON:0000474;;UBERON:0016887 | ||
Latest revision as of 17:23, 12 September 2014
| Name: | placenta | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin[GO]. The fetal portion of the placenta is known as the villous chorion. The maternal portion is known as the decidua basalis. The two portions are held together by anchoring villi that are anchored to the decidua basalis by the cytotrophoblastic shell." Wikipedia:Placenta | ||
| Xrefs: |
| ||
| Synonyms: |
"allantoic placenta" EXACT [ISBN10:0073040584] "eutherian placenta" EXACT [] | ||
| Comments: | Taxon notes: Eutherians: In eutherians, the chorioallantoic membrane of the fetus establishes intimate contact with the adjacent vascular wall of the mother's uterus to produce the placenta, a composite structure formed in part from tissues of the fetus and in part from tissues of the mother [ISBN10:0073040584 "Vertebrates, Kardong"]. TODO - is taxon restriction too strict, even if we restrict def to allantoic placenta? - WP says: also found in some snakes and lizards with varying levels of development up to mammalian levels. Pough et al. 1992. Herpetology: Third Edition. Pearson Prentice Hall:Pearson Education, Inc., 2002. // See also: doi:10.1002/jmor.11011 // Marsupials possess only a rudimentary placenta, with reduced nutrient and oxygen exchanging capabilities. | ||
| Alt_id: | UBERON:FMA_63934-MA_0000386-MIAA_0000279 | ||
| Subset: |
organ_slim uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000062(organ),UBERON:0000077(mixed endoderm/mesoderm-derived structure),UBERON:0000478(extraembryonic structure),UBERON:0005156(reproductive structure),UBERON:0014404(female anatomical structure) |
|---|---|
| develops_from: | UBERON:0000995(uterus),UBERON:0003124(chorion),UBERON:0004340(allantois) |
| part_of: | UBERON:0000474(female reproductive system),UBERON:0016887(entire extraembryonic component) |
Children
| derives from: | FF:0010021 (human placenta - adult sample),FF:0011381 (mouse placenta- adult pregnant day10 sample),FF:0011384 (mouse placenta- adult pregnant day17 sample),FF:0200028 (hematopoietic stem cell, placenta derived sample) |
|---|---|
| part of: | CL:0002558 (fibroblast of villous mesenchyme),CL:0002577 (placental epithelial cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10021-101D3 (placenta, adult, pool1)
- 10091-102C1
- 11278-116H9 (Placental Epithelial Cells, donor1)
- 11355-117H5 (Placental Epithelial Cells, donor2)
- 11427-118G5 (Placental Epithelial Cells, donor3)
- 11950-126B6 (hematopoietic stem cell, placenta derived, embryo E10.5)
- 11952-126B8 (hematopoietic stem cell, placenta derived, embryo E11.5)
- 11953-126B9 (hematopoietic stem cell, fetal liver derived, embryo E12.5)
- 11954-126C1 (hematopoietic stem cell, fetal liver derived, embryo E14.5)
- 11955-126C2 (hematopoietic stem cell, fetal liver derived, embryo E19.5)
... further results Mouse (Mus musculus)
- 10021-101D3 (placenta, adult, pool1)
- 10091-102C1
- 11278-116H9 (Placental Epithelial Cells, donor1)
- 11355-117H5 (Placental Epithelial Cells, donor2)
- 11427-118G5 (Placental Epithelial Cells, donor3)
- 11950-126B6 (hematopoietic stem cell, placenta derived, embryo E10.5)
- 11952-126B8 (hematopoietic stem cell, placenta derived, embryo E11.5)
- 11953-126B9 (hematopoietic stem cell, fetal liver derived, embryo E12.5)
- 11954-126C1 (hematopoietic stem cell, fetal liver derived, embryo E14.5)
- 11955-126C2 (hematopoietic stem cell, fetal liver derived, embryo E19.5)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001987 (placenta), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.23e-89 | FFCP PHASE2:Hg19::chr11:1982869..1982890,+#_6eb4a59f47192f38652377ca3d895831 | p@chr11:1982869..1982890, + |
| 4.23e-89 | FFCP PHASE1:Hg19::chr11:1982869..1982890,+#_6eb4a59f47192f38652377ca3d895831 | p@chr11:1982869..1982890, + |
| 7.73e-89 | FFCP PHASE2:Hg19::chr5:153858046..153858049,+#_519aaa90d7385a087cdecaddbcd62674 | p@chr5:153858046..153858049, + |
| 7.73e-89 | FFCP PHASE1:Hg19::chr5:153858046..153858049,+#_519aaa90d7385a087cdecaddbcd62674 | p@chr5:153858046..153858049, + |
| 1.04e-88 | FFCP PHASE2:Hg19::chr5:153854787..153854796,-#_7e7073f06c5a95f529393e3d2a89b5ff | p@chr5:153854787..153854796, - |
| 1.04e-88 | FFCP PHASE1:Hg19::chr5:153854787..153854796,-#_7e7073f06c5a95f529393e3d2a89b5ff | p@chr5:153854787..153854796, - |
| 1.41e-88 | FFCP PHASE2:Hg19::chr1:209704573..209704587,+#_2aedfc191048e68a67047135064be737 | p@chr1:209704573..209704587, + |
| 1.41e-88 | FFCP PHASE1:Hg19::chr1:209704573..209704587,+#_2aedfc191048e68a67047135064be737 | p@chr1:209704573..209704587, + |
| 1.91e-88 | FFCP PHASE1:Hg19::chr1:209704648..209704656,+#_036ceb8d26b52f19c29d47bca0f8b1aa | p@chr1:209704648..209704656, + |
| 1.91e-88 | FFCP PHASE2:Hg19::chr1:209704648..209704656,+#_036ceb8d26b52f19c29d47bca0f8b1aa | p@chr1:209704648..209704656, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:92613101..92613124,+#_6520e98c36637a478344c8458e9c6fc8 | p2@ENSMUST00000148919 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:27734346..27734351,-#_6520e98c36637a478344c8458e9c6fc8 | p2@Prl7a1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:55273056..55273059,-#_6520e98c36637a478344c8458e9c6fc8 | p@chr14:55273056..55273059, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:97907005..97907011,+#_6520e98c36637a478344c8458e9c6fc8 | p@chr6:97907005..97907011, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:35991777..35991786,+#_6520e98c36637a478344c8458e9c6fc8 | p@chr17:35991777..35991786, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:27335655..27335658,+#_6520e98c36637a478344c8458e9c6fc8 | p@chr13:27335655..27335658, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:92613101..92613124,+#_6520e98c36637a478344c8458e9c6fc8 | p2@ENSMUST00000148919 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:35991777..35991786,+#_6520e98c36637a478344c8458e9c6fc8 | p@chr17:35991777..35991786, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:69915427..69915460,-#_6520e98c36637a478344c8458e9c6fc8 | p@chr14:69915427..69915460, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:27440741..27440750,+#_6520e98c36637a478344c8458e9c6fc8 | p@chr13:27440741..27440750, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:43250181..43250190,-#_6520e98c36637a478344c8458e9c6fc8 | p@chr13:43250181..43250190, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:17788884..17788890,+#_6520e98c36637a478344c8458e9c6fc8 | p3@Psg29 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:89171538..89171544,+#_6520e98c36637a478344c8458e9c6fc8 | p@chr3:89171538..89171544, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:4310640..4310648,+#_6520e98c36637a478344c8458e9c6fc8 | p59@Frmd4a |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:121053540..121053548,-#_6520e98c36637a478344c8458e9c6fc8 | p@chr6:121053540..121053548, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:140663013..140663022,+#_6520e98c36637a478344c8458e9c6fc8 | p@chr4:140663013..140663022, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:8927606..8927607,-#_6520e98c36637a478344c8458e9c6fc8 | p@chr17:8927606..8927607, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:97907005..97907011,+#_6520e98c36637a478344c8458e9c6fc8 | p@chr6:97907005..97907011, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:55273056..55273059,-#_6520e98c36637a478344c8458e9c6fc8 | p@chr14:55273056..55273059, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:121053540..121053548,-#_6520e98c36637a478344c8458e9c6fc8 | p@chr6:121053540..121053548, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:61041595..61041607,-#_6520e98c36637a478344c8458e9c6fc8 | p@chr13:61041595..61041607, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:17788884..17788890,+#_6520e98c36637a478344c8458e9c6fc8 | p3@Psg29 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:137716644..137716651,-#_6520e98c36637a478344c8458e9c6fc8 | p5@Nsmce4a |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:8927606..8927607,-#_6520e98c36637a478344c8458e9c6fc8 | p@chr17:8927606..8927607, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:27734346..27734351,-#_6520e98c36637a478344c8458e9c6fc8 | p2@Prl7a1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:61041595..61041607,-#_6520e98c36637a478344c8458e9c6fc8 | p@chr13:61041595..61041607, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:27335655..27335658,+#_6520e98c36637a478344c8458e9c6fc8 | p@chr13:27335655..27335658, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:137716644..137716651,-#_6520e98c36637a478344c8458e9c6fc8 | p5@Nsmce4a |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:140663013..140663022,+#_6520e98c36637a478344c8458e9c6fc8 | p@chr4:140663013..140663022, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:43250181..43250190,-#_6520e98c36637a478344c8458e9c6fc8 | p@chr13:43250181..43250190, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:27337717..27337754,-#_6520e98c36637a478344c8458e9c6fc8 | p@chr13:27337717..27337754, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:27337717..27337754,-#_6520e98c36637a478344c8458e9c6fc8 | p@chr13:27337717..27337754, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:27440741..27440750,+#_6520e98c36637a478344c8458e9c6fc8 | p@chr13:27440741..27440750, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:89171538..89171544,+#_6520e98c36637a478344c8458e9c6fc8 | p@chr3:89171538..89171544, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:4310640..4310648,+#_6520e98c36637a478344c8458e9c6fc8 | p59@Frmd4a |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:69915427..69915460,-#_6520e98c36637a478344c8458e9c6fc8 | p@chr14:69915427..69915460, - |
| 1.21e-74 | FFCP PHASE2:Hg19::chr20:36794938..36794945,-#_6731b36a39cb1b870682ee4794980369 | p45@TGM2 |
| 1.21e-74 | FFCP PHASE1:Hg19::chr20:36794938..36794945,-#_6731b36a39cb1b870682ee4794980369 | p45@TGM2 |
| 2.01e-74 | FFCP PHASE2:Hg19::chr14:24729174..24729183,-#_f6e08503d7b18ad1a27a001ea3675bee | p17@TGM1 |
| 2.01e-74 | FFCP PHASE1:Hg19::chr8:22034506..22034518,+#_f6e08503d7b18ad1a27a001ea3675bee | p@chr8:22034506..22034518, + |
| 2.01e-74 | FFCP PHASE1:Hg19::chr14:24729174..24729183,-#_f6e08503d7b18ad1a27a001ea3675bee | p17@TGM1 |
| 2.01e-74 | FFCP PHASE2:Hg19::chr8:22034506..22034518,+#_f6e08503d7b18ad1a27a001ea3675bee | p@chr8:22034506..22034518, + |
| 3.32e-74 | FFCP PHASE1:Hg19::chr5:89143573..89143607,-#_a6163541f42b8d7f9dd472ecadcf9fa1 | p@chr5:89143573..89143607, - |
| 3.32e-74 | FFCP PHASE2:Hg19::chr3:134044856..134044890,+#_a6163541f42b8d7f9dd472ecadcf9fa1 | p@chr3:134044856..134044890, + |
| 3.32e-74 | FFCP PHASE2:Hg19::chr5:89143573..89143607,-#_a6163541f42b8d7f9dd472ecadcf9fa1 | p@chr5:89143573..89143607, - |
| 3.32e-74 | FFCP PHASE1:Hg19::chr3:134044856..134044890,+#_a6163541f42b8d7f9dd472ecadcf9fa1 | p@chr3:134044856..134044890, + |
| 4.26e-74 | FFCP PHASE1:Hg19::chr3:55384353..55384357,+#_dd6d470164431220176a9cead81499f2 | p@chr3:55384353..55384357, + |
| 4.26e-74 | FFCP PHASE2:Hg19::chr3:55384353..55384357,+#_dd6d470164431220176a9cead81499f2 | p@chr3:55384353..55384357, + |
| 5.48e-74 | FFCP PHASE2:Hg19::chr1:209704612..209704625,+#_350036146ca17ac8cedd486f2809da93 | p@chr1:209704612..209704625, + |
| 5.48e-74 | FFCP PHASE1:Hg19::chr1:209704612..209704625,+#_350036146ca17ac8cedd486f2809da93 | p@chr1:209704612..209704625, + |
| 7.04e-74 | FFCP PHASE1:Hg19::chr17:37824598..37824605,+#_d13806b833e30b5ddd7e89bd0eb5a699 | p15@PNMT |
| 7.04e-74 | FFCP PHASE2:Hg19::chr17:37824598..37824605,+#_d13806b833e30b5ddd7e89bd0eb5a699 | p15@PNMT |
| 4.67e-66 | FFCP PHASE1:Hg19::chr12:51785088..51785093,-#_685a24c8aeb62986ef82e43b11f8542b | p12@GALNT6 |
| 4.67e-66 | FFCP PHASE2:Hg19::chr12:51785088..51785093,-#_685a24c8aeb62986ef82e43b11f8542b | p12@GALNT6 |
| 2.61e-64 | FFCP PHASE2:Hg19::chr14:104202639..104202646,-#_b39c40c1f1fb816ed1885556e1b5b718 | p@chr14:104202639..104202646, - |
| 2.61e-64 | FFCP PHASE1:Hg19::chr14:104202639..104202646,-#_b39c40c1f1fb816ed1885556e1b5b718 | p@chr14:104202639..104202646, - |
| 3.24e-64 | FFCP PHASE2:Hg19::chr9:112300690..112300705,-#_7ae518485113525c8ef794460364f752 | p@chr9:112300690..112300705, - |
| 3.24e-64 | FFCP PHASE1:Hg19::chr5:153855055..153855066,-#_7ae518485113525c8ef794460364f752 | p@chr5:153855055..153855066, - |
| 3.24e-64 | FFCP PHASE2:Hg19::chr9:88126069..88126080,-#_7ae518485113525c8ef794460364f752 | p@chr9:88126069..88126080, - |
| 3.24e-64 | FFCP PHASE1:Hg19::chr9:112300690..112300705,-#_7ae518485113525c8ef794460364f752 | p@chr9:112300690..112300705, - |
| 3.24e-64 | FFCP PHASE1:Hg19::chr9:88126069..88126080,-#_7ae518485113525c8ef794460364f752 | p@chr9:88126069..88126080, - |
| 3.24e-64 | FFCP PHASE2:Hg19::chr5:153855055..153855066,-#_7ae518485113525c8ef794460364f752 | p@chr5:153855055..153855066, - |
| 4.02e-64 | FFCP PHASE1:Hg19::chr20:61288222..61288232,+#_5023d421dd3a6e9acfeb2be366ce050b | p14@SLCO4A1 |
| 4.02e-64 | FFCP PHASE2:Hg19::chr20:61288222..61288232,+#_5023d421dd3a6e9acfeb2be366ce050b | p14@SLCO4A1 |
| 4.02e-64 | FFCP PHASE1:Hg19::chr17:37824217..37824226,+#_5023d421dd3a6e9acfeb2be366ce050b | p12@PNMT |
| 4.02e-64 | FFCP PHASE2:Hg19::chr17:37824217..37824226,+#_5023d421dd3a6e9acfeb2be366ce050b | p12@PNMT |
| 6.18e-64 | FFCP PHASE2:Hg19::chr2:25704561..25704572,-#_d07cc1e2faa752c687836ee94a0a5e79 | p20@DTNB |
| 6.18e-64 | FFCP PHASE1:Hg19::chr2:25704561..25704572,-#_d07cc1e2faa752c687836ee94a0a5e79 | p20@DTNB |
| 9.51e-64 | FFCP PHASE2:Hg19::chr5:170239966..170239982,+#_cb850e184bc3301fd3c4d5ccf42e91cb | p@chr5:170239966..170239982, + |
| 9.51e-64 | FFCP PHASE1:Hg19::chr5:170239966..170239982,+#_cb850e184bc3301fd3c4d5ccf42e91cb | p@chr5:170239966..170239982, + |
| 1.46e-63 | FFCP PHASE2:Hg19::chr10:131344593..131344605,+#_9da4d1b2bb455b7ce6cdacabfef92d97 | p@chr10:131344593..131344605, + |
| 1.46e-63 | FFCP PHASE1:Hg19::chr10:131344593..131344605,+#_9da4d1b2bb455b7ce6cdacabfef92d97 | p@chr10:131344593..131344605, + |
| 1.81e-63 | FFCP PHASE1:Hg19::chr5:170176045..170176055,-#_2e36cbf251984572513b08321b8b6dbd | p@chr5:170176045..170176055, - |
| 1.81e-63 | FFCP PHASE2:Hg19::chr5:170176045..170176055,-#_2e36cbf251984572513b08321b8b6dbd | p@chr5:170176045..170176055, - |
| 5.76e-61 | FFCP PHASE2:Hg19::chr3:55384975..55384986,-#_bf7b5694adc894ed0bc229729bbd963d | p1@ENST00000469806 |
| 5.76e-61 | FFCP PHASE1:Hg19::chr3:55384975..55384986,-#_bf7b5694adc894ed0bc229729bbd963d | p1@ENST00000469806 |
| 4.28e-60 | FFCP PHASE2:Hg19::chr15:68344995..68345013,+#_4123e52f78fbdb3206ee3f92fe5d5d34 | p@chr15:68344995..68345013, + |
| 4.28e-60 | FFCP PHASE1:Hg19::chr15:68344995..68345013,+#_4123e52f78fbdb3206ee3f92fe5d5d34 | p@chr15:68344995..68345013, + |
| 1.68e-58 | FFCP PHASE1:Mm9::chr16:92613000..92613021,+#_04e3cb903cae331bb8ebe4417c0f582b | p1@ENSMUST00000148919 |
| 1.68e-58 | FFCP PHASE2:Mm9::chrX:131570630..131570638,-#_04e3cb903cae331bb8ebe4417c0f582b | p6@ENSMUST00000153610 |
| 1.68e-58 | FFCP PHASE2:Mm9::chr15:78324802..78324811,-#_04e3cb903cae331bb8ebe4417c0f582b | p@chr15:78324802..78324811, - |
| 1.68e-58 | FFCP PHASE2:Mm9::chr13:61105387..61105403,+#_04e3cb903cae331bb8ebe4417c0f582b | p@chr13:61105387..61105403, + |
| 1.68e-58 | FFCP PHASE1:Mm9::chrX:53570692..53570717,+#_04e3cb903cae331bb8ebe4417c0f582b | p1@1600025M17Rik |
| 1.68e-58 | FFCP PHASE1:Mm9::chr1:63260883..63260896,-#_04e3cb903cae331bb8ebe4417c0f582b | p3@Gpr1 |
| 1.68e-58 | FFCP PHASE1:Mm9::chr7:150952911..150952917,-#_04e3cb903cae331bb8ebe4417c0f582b | p3@Mrgprg |
| 1.68e-58 | FFCP PHASE1:Mm9::chr13:27288509..27288515,+#_04e3cb903cae331bb8ebe4417c0f582b | p1@Prl3c1 |
| 1.68e-58 | FFCP PHASE2:Mm9::chr1:63260883..63260896,-#_04e3cb903cae331bb8ebe4417c0f582b | p3@Gpr1 |
| 1.68e-58 | FFCP PHASE1:Mm9::chr11:55223511..55223524,-#_04e3cb903cae331bb8ebe4417c0f582b | p@chr11:55223511..55223524, - |
| 1.68e-58 | FFCP PHASE1:Mm9::chr5:125523193..125523196,-#_04e3cb903cae331bb8ebe4417c0f582b | p23@Ncor2 |
| 1.68e-58 | FFCP PHASE1:Mm9::chr7:17788842..17788851,+#_04e3cb903cae331bb8ebe4417c0f582b | p2@Psg29 |
