Personal tools

UBERON:0003835: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 13: Line 13:
|located_in=
|located_in=
|name=abdominal segment blood vessel
|name=abdominal segment blood vessel
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0002417
|part_of=UBERON:0002417

Latest revision as of 17:41, 12 September 2014

Name:abdominal segment blood vessel
Namespace:FANTOM
Definition:"A blood vessel that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic]
Xrefs:
links:
MA:0000524
Synonyms: "abdominal segment of trunk blood vessel" EXACT [OBOL:automatic]
"blood vessel of abdominal segment of trunk" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003513(trunk blood vessel)
part_of:UBERON:0002417(abdominal segment of trunk)



Children

is a:UBERON:0003497 (abdomen blood vessel)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results Mouse (Mus musculus)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003835 (abdominal segment blood vessel), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.99e-131FFCP PHASE2:Hg19::chr7:158330204..158330217,+#_dd3bfdb2d1dce4fcfa71f3df476d6b16p2@ENST00000448698
8.99e-131FFCP PHASE1:Hg19::chr7:158330204..158330217,+#_dd3bfdb2d1dce4fcfa71f3df476d6b16p2@ENST00000448698
3.07e-86FFCP PHASE1:Mm9::chr10:93942324..93942342,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr10:93942324..93942342, -
3.07e-86FFCP PHASE2:Mm9::chr17:35096519..35096524,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr17:35096519..35096524, +
3.07e-86FFCP PHASE2:Mm9::chr8:86713876..86713879,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr8:86713876..86713879, +
3.07e-86FFCP PHASE1:Mm9::chr15:32178407..32178408,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr15:32178407..32178408, -
3.07e-86FFCP PHASE1:Mm9::chr12:86691503..86691504,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr12:86691503..86691504, -
3.07e-86FFCP PHASE2:Mm9::chr15:82207617..82207621,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr15:82207617..82207621, +
3.07e-86FFCP PHASE1:Mm9::chr2:11935531..11935538,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr2:11935531..11935538, -
3.07e-86FFCP PHASE1:Mm9::chr17:35093377..35093381,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr17:35093377..35093381, +
3.07e-86FFCP PHASE2:Mm9::chr13:5840965..5840966,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr13:5840965..5840966, +
3.07e-86FFCP PHASE2:Mm9::chr13:113554186..113554192,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr13:113554186..113554192, +
3.07e-86FFCP PHASE1:Mm9::chr17:24807620..24807650,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr17:24807620..24807650, -
3.07e-86FFCP PHASE1:Mm9::chr15:82193340..82193343,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr15:82193340..82193343, +
3.07e-86FFCP PHASE1:Mm9::chr18:39297570..39297573,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr18:39297570..39297573, -
3.07e-86FFCP PHASE1:Mm9::chr14:15179132..15179141,+#_d8e39b4f3edc4301b0d316aab64dbb70p8@Il3ra
3.07e-86FFCP PHASE2:Mm9::chr8:111108947..111108951,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr8:111108947..111108951, +
3.07e-86FFCP PHASE2:Mm9::chr17:34796428..34796430,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr17:34796428..34796430, -
3.07e-86FFCP PHASE1:Mm9::chr13:113543694..113543702,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr13:113543694..113543702, -
3.07e-86FFCP PHASE2:Mm9::chr5:64344878..64344887,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr5:64344878..64344887, -
3.07e-86FFCP PHASE2:Mm9::chr11:107196799..107196814,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr11:107196799..107196814, +
3.07e-86FFCP PHASE2:Mm9::chr12:100752983..100752984,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr12:100752983..100752984, +
3.07e-86FFCP PHASE1:Mm9::chr18:35881716..35881727,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr18:35881716..35881727, -
3.07e-86FFCP PHASE1:Mm9::chr13:96429295..96429302,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr13:96429295..96429302, -
3.07e-86FFCP PHASE2:Mm9::chr1:132405466..132405470,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr1:132405466..132405470, +
3.07e-86FFCP PHASE2:Mm9::chr6:91441074..91441080,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr6:91441074..91441080, -
3.07e-86FFCP PHASE2:Mm9::chr6:51831254..51831256,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr6:51831254..51831256, -
3.07e-86FFCP PHASE1:Mm9::chr10:117419958..117419964,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr10:117419958..117419964, +
3.07e-86FFCP PHASE1:Mm9::chr12:74684893..74684910,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr12:74684893..74684910, -
3.07e-86FFCP PHASE2:Mm9::chr3:104857794..104857802,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr3:104857794..104857802, -
3.07e-86FFCP PHASE2:Mm9::chr11:48685851..48685860,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr11:48685851..48685860, -
3.07e-86FFCP PHASE1:Mm9::chr10:60279719..60279737,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr10:60279719..60279737, -
3.07e-86FFCP PHASE2:Mm9::chr11:115280630..115280662,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr11:115280630..115280662, +
3.07e-86FFCP PHASE1:Mm9::chr8:11183699..11183703,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr8:11183699..11183703, -
3.07e-86FFCP PHASE1:Mm9::chr5:53111093..53111095,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr5:53111093..53111095, +
3.07e-86FFCP PHASE1:Mm9::chr17:35096519..35096524,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr17:35096519..35096524, +
3.07e-86FFCP PHASE1:Mm9::chr16:28911901..28911906,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr16:28911901..28911906, -
3.07e-86FFCP PHASE2:Mm9::chr17:35093616..35093631,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr17:35093616..35093631, -
3.07e-86FFCP PHASE2:Mm9::chr3:121593688..121593695,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr3:121593688..121593695, +
3.07e-86FFCP PHASE2:Mm9::chr7:52781901..52781904,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr7:52781901..52781904, +
3.07e-86FFCP PHASE1:Mm9::chr1:66883923..66883955,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr1:66883923..66883955, -
3.07e-86FFCP PHASE2:Mm9::chr18:38831400..38831402,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr18:38831400..38831402, -
3.07e-86FFCP PHASE2:Mm9::chr13:113542610..113542614,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr13:113542610..113542614, +
3.07e-86FFCP PHASE1:Mm9::chr10:21389022..21389032,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr10:21389022..21389032, +
3.07e-86FFCP PHASE2:Mm9::chr10:93819538..93819549,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr10:93819538..93819549, +
3.07e-86FFCP PHASE2:Mm9::chr18:44793802..44793835,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr18:44793802..44793835, +
3.07e-86FFCP PHASE1:Mm9::chr17:12388232..12388237,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr17:12388232..12388237, +
3.07e-86FFCP PHASE2:Mm9::chr17:24807620..24807650,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr17:24807620..24807650, -
3.07e-86FFCP PHASE1:Mm9::chr8:127816016..127816021,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr8:127816016..127816021, +
3.07e-86FFCP PHASE1:Mm9::chr10:85585949..85585969,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr10:85585949..85585969, -
3.07e-86FFCP PHASE2:Mm9::chr8:89310639..89310641,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr8:89310639..89310641, -
3.07e-86FFCP PHASE1:Mm9::chr4:126939557..126939562,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr4:126939557..126939562, +
3.07e-86FFCP PHASE2:Mm9::chr14:8928284..8928331,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr14:8928284..8928331, +
3.07e-86FFCP PHASE1:Mm9::chr3:121593688..121593695,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr3:121593688..121593695, +
3.07e-86FFCP PHASE2:Mm9::chr12:81955014..81955018,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr12:81955014..81955018, +
3.07e-86FFCP PHASE2:Mm9::chr10:85585991..85586025,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr10:85585991..85586025, -
3.07e-86FFCP PHASE2:Mm9::chr12:85288471..85288502,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr12:85288471..85288502, +
3.07e-86FFCP PHASE1:Mm9::chr12:100752983..100752984,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr12:100752983..100752984, +
3.07e-86FFCP PHASE1:Mm9::chr18:60398371..60398393,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr18:60398371..60398393, -
3.07e-86FFCP PHASE2:Mm9::chr13:96429295..96429302,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr13:96429295..96429302, -
3.07e-86FFCP PHASE2:Mm9::chr10:8471698..8471701,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr10:8471698..8471701, +
3.07e-86FFCP PHASE2:Mm9::chr16:28911901..28911906,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr16:28911901..28911906, -
3.07e-86FFCP PHASE1:Mm9::chr12:86691530..86691535,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr12:86691530..86691535, -
3.07e-86FFCP PHASE2:Mm9::chr16:30944451..30944485,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr16:30944451..30944485, +
3.07e-86FFCP PHASE1:Mm9::chr15:90508949..90508955,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr15:90508949..90508955, -
3.07e-86FFCP PHASE2:Mm9::chr15:82209805..82209851,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr15:82209805..82209851, +
3.07e-86FFCP PHASE2:Mm9::chr5:53111093..53111095,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr5:53111093..53111095, +
3.07e-86FFCP PHASE1:Mm9::chr5:114422970..114422985,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr5:114422970..114422985, -
3.07e-86FFCP PHASE1:Mm9::chr17:35093616..35093631,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr17:35093616..35093631, -
3.07e-86FFCP PHASE2:Mm9::chr4:57687477..57687488,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr4:57687477..57687488, +
3.07e-86FFCP PHASE1:Mm9::chr5:124112234..124112240,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr5:124112234..124112240, +
3.07e-86FFCP PHASE1:Mm9::chr11:107196799..107196814,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr11:107196799..107196814, +
3.07e-86FFCP PHASE2:Mm9::chr12:25364645..25364655,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr12:25364645..25364655, +
3.07e-86FFCP PHASE2:Mm9::chr19:29573929..29573932,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr19:29573929..29573932, +
3.07e-86FFCP PHASE1:Mm9::chr7:87919399..87919406,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr7:87919399..87919406, +
3.07e-86FFCP PHASE2:Mm9::chr18:35900327..35900366,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr18:35900327..35900366, +
3.07e-86FFCP PHASE1:Mm9::chr15:82207617..82207621,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr15:82207617..82207621, +
3.07e-86FFCP PHASE1:Mm9::chr18:39513150..39513152,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr18:39513150..39513152, +
3.07e-86FFCP PHASE2:Mm9::chr16:11009028..11009039,+#_d8e39b4f3edc4301b0d316aab64dbb70p4@Gm4262
3.07e-86FFCP PHASE1:Mm9::chr11:54785454..54785456,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr11:54785454..54785456, -
3.07e-86FFCP PHASE2:Mm9::chr17:34798555..34798562,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr17:34798555..34798562, +
3.07e-86FFCP PHASE2:Mm9::chr16:91441786..91441787,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr16:91441786..91441787, -
3.07e-86FFCP PHASE1:Mm9::chr13:113550715..113550722,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr13:113550715..113550722, -
3.07e-86FFCP PHASE2:Mm9::chr8:114123814..114123821,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr8:114123814..114123821, -
3.07e-86FFCP PHASE1:Mm9::chr4:137487112..137487117,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr4:137487112..137487117, +
3.07e-86FFCP PHASE2:Mm9::chr12:74684893..74684910,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr12:74684893..74684910, -
3.07e-86FFCP PHASE2:Mm9::chr4:126939557..126939562,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr4:126939557..126939562, +
3.07e-86FFCP PHASE1:Mm9::chr3:90270007..90270012,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr3:90270007..90270012, +
3.07e-86FFCP PHASE1:Mm9::chr13:96429602..96429605,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr13:96429602..96429605, -
3.07e-86FFCP PHASE2:Mm9::chr18:5125608..5125613,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr18:5125608..5125613, +
3.07e-86FFCP PHASE2:Mm9::chr15:97402708..97402712,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr15:97402708..97402712, +
3.07e-86FFCP PHASE2:Mm9::chr4:137487112..137487117,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr4:137487112..137487117, +
3.07e-86FFCP PHASE1:Mm9::chr3:104857794..104857802,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr3:104857794..104857802, -
3.07e-86FFCP PHASE2:Mm9::chr14:15179132..15179141,+#_d8e39b4f3edc4301b0d316aab64dbb70p8@Il3ra
3.07e-86FFCP PHASE1:Mm9::chr16:85547242..85547252,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr16:85547242..85547252, +
3.07e-86FFCP PHASE1:Mm9::chr15:59435855..59435878,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr15:59435855..59435878, -
3.07e-86FFCP PHASE2:Mm9::chr11:54785454..54785456,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr11:54785454..54785456, -
3.07e-86FFCP PHASE2:Mm9::chr11:118287827..118287833,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr11:118287827..118287833, -
3.07e-86FFCP PHASE2:Mm9::chr6:129180613..129180616,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr6:129180613..129180616, +
3.07e-86FFCP PHASE2:Mm9::chr5:32912678..32912687,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr5:32912678..32912687, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003835&oldid=3277588"