UBERON:0003852: Difference between revisions
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|located_in= | |located_in= | ||
|name=rhombencephalon neural crest | |name=rhombencephalon neural crest | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:41, 12 September 2014
| Name: | rhombencephalon neural crest | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Xrefs: |
| ||
| Synonyms: |
"neural crest hindbrain" EXACT [ZFA:0007063] "rhombencephalic neural crest" EXACT [ZFA:0007063] | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002342(neural crest),UBERON:0003099(cranial neural crest) |
|---|
Children
| develops from: | UBERON:0010258 (mesenchyme from rhombencephalic neural crest),UBERON:0010259 (1st arch mesenchyme from neural crest) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003852 (rhombencephalon neural crest), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_4eb56ccc91655258e3a16957387c06cc | p14@C17orf67 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_4eb56ccc91655258e3a16957387c06cc | p14@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_041c3dbb351e58fafb6afdc34b85d1fe | p13@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_041c3dbb351e58fafb6afdc34b85d1fe | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_041c3dbb351e58fafb6afdc34b85d1fe | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_041c3dbb351e58fafb6afdc34b85d1fe | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_041c3dbb351e58fafb6afdc34b85d1fe | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_041c3dbb351e58fafb6afdc34b85d1fe | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_041c3dbb351e58fafb6afdc34b85d1fe | p13@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_041c3dbb351e58fafb6afdc34b85d1fe | p11@C17orf67 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_98a5615ba8c3ee074c36a5e3c9fe52f9 | p14@MAB21L2 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_98a5615ba8c3ee074c36a5e3c9fe52f9 | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_98a5615ba8c3ee074c36a5e3c9fe52f9 | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_98a5615ba8c3ee074c36a5e3c9fe52f9 | p14@MAB21L2 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_e2b2889512fe7151ec98624f646005b5 | p@chr4:151505582..151505614, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_e2b2889512fe7151ec98624f646005b5 | p@chr4:151505582..151505614, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_6c8f7c2243bedd39a83da3ee52939694 | p9@C17orf67 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_6c8f7c2243bedd39a83da3ee52939694 | p@chr8:57354278..57354286, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_6c8f7c2243bedd39a83da3ee52939694 | p9@C17orf67 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_6c8f7c2243bedd39a83da3ee52939694 | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_6c8f7c2243bedd39a83da3ee52939694 | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_6c8f7c2243bedd39a83da3ee52939694 | p@chr8:57354278..57354286, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_473f4918197afe5c93113c1422a8ee7a | p@chr8:57802672..57802682, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_473f4918197afe5c93113c1422a8ee7a | p@chr8:57802672..57802682, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_17332b73083fcc0d60559f37b7327caa | p1@AK123925 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_17332b73083fcc0d60559f37b7327caa | p@chr5:75913767..75913778, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_17332b73083fcc0d60559f37b7327caa | p1@AK123925 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_17332b73083fcc0d60559f37b7327caa | p@chr5:75913767..75913778, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_17332b73083fcc0d60559f37b7327caa | p7@ALX1 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_17332b73083fcc0d60559f37b7327caa | p7@ALX1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_513d59a1b933d87dd4219acd0f3226a1 | p@chr2:33519090..33519092, + |
| 6.58e-50 | FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_513d59a1b933d87dd4219acd0f3226a1 | p@chr2:33519090..33519092, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_513d59a1b933d87dd4219acd0f3226a1 | p23@FLT1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_513d59a1b933d87dd4219acd0f3226a1 | p23@FLT1 |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_9604bcbfd767c7d345b0af898fd5abfa | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_9604bcbfd767c7d345b0af898fd5abfa | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_9604bcbfd767c7d345b0af898fd5abfa | p@chr8:57353666..57353675, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_9604bcbfd767c7d345b0af898fd5abfa | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_9604bcbfd767c7d345b0af898fd5abfa | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_9604bcbfd767c7d345b0af898fd5abfa | p@chr8:57353666..57353675, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_a6029a129a1ed07c86486ddb67ede5f6 | p12@FAM65C |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_a6029a129a1ed07c86486ddb67ede5f6 | p2@TAS1R1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_a6029a129a1ed07c86486ddb67ede5f6 | p12@FAM65C |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_a6029a129a1ed07c86486ddb67ede5f6 | p8@LHX8 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_a6029a129a1ed07c86486ddb67ede5f6 | p2@TAS1R1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_a6029a129a1ed07c86486ddb67ede5f6 | p8@LHX8 |
| 2.21e-40 | FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_5611f8b5860773a793e779668f0b1e3c | p@chr16:67687543..67687559, - |
| 2.21e-40 | FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_5611f8b5860773a793e779668f0b1e3c | p@chr5:75912831..75912842, - |
| 2.21e-40 | FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_5611f8b5860773a793e779668f0b1e3c | p@chr16:67687543..67687559, - |
| 2.21e-40 | FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_5611f8b5860773a793e779668f0b1e3c | p@chr5:75912831..75912842, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_7272474a92efad6d55ac0103443a9825 | p@chr6:46190219..46190230, - |
| 3.3e-40 | FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_7272474a92efad6d55ac0103443a9825 | p@chr9:125165007..125165016, + |
| 3.3e-40 | FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_7272474a92efad6d55ac0103443a9825 | p@chr6:46190219..46190230, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_7272474a92efad6d55ac0103443a9825 | p@chr9:125165007..125165016, + |
| 1.84e-34 | FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_f80e6a0b21f51ceae77f96d8027b5b47 | p@chr10:15760985..15760992, - |
| 1.84e-34 | FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_f80e6a0b21f51ceae77f96d8027b5b47 | p@chr10:15760985..15760992, - |
| 1.84e-34 | FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_f80e6a0b21f51ceae77f96d8027b5b47 | p5@PENK |
| 1.84e-34 | FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_f80e6a0b21f51ceae77f96d8027b5b47 | p4@CPZ |
| 1.84e-34 | FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_f80e6a0b21f51ceae77f96d8027b5b47 | p4@CPZ |
| 1.84e-34 | FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_f80e6a0b21f51ceae77f96d8027b5b47 | p5@PENK |
| 2.58e-34 | FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_90ad2fa9a23afade21924050b100bd7e | p9@SIX1 |
| 2.58e-34 | FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_90ad2fa9a23afade21924050b100bd7e | p9@SIX1 |
| 5.05e-34 | FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_fb2a10ebe51524f21c49a2cde0cede5e | p@chr6:134327986..134327991, - |
| 5.05e-34 | FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_fb2a10ebe51524f21c49a2cde0cede5e | p@chr6:134327986..134327991, - |
| 7.06e-34 | FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_fdc4d074be5008edc0d7cc11c3dd43f8 | p@chr8:57353676..57353688, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_fdc4d074be5008edc0d7cc11c3dd43f8 | p@chr8:57353676..57353688, - |
| 7.06e-34 | FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_fdc4d074be5008edc0d7cc11c3dd43f8 | p@chr13:58291223..58291226, + |
| 7.06e-34 | FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_fdc4d074be5008edc0d7cc11c3dd43f8 | p@chr13:58291223..58291226, + |
| 9.85e-34 | FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_f78761e1327d88b526b5a97fc742b8db | p4@PLAC1 |
| 9.85e-34 | FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_f78761e1327d88b526b5a97fc742b8db | p12@FBN2 |
| 9.85e-34 | FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_f78761e1327d88b526b5a97fc742b8db | p@chr5:19721484..19721507, - |
| 9.85e-34 | FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_f78761e1327d88b526b5a97fc742b8db | p4@PLAC1 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_f78761e1327d88b526b5a97fc742b8db | p12@FBN2 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_f78761e1327d88b526b5a97fc742b8db | p@chr5:19721484..19721507, - |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_ecd92d588f401741b0da33ef048de6e9 | p@chr8:57353982..57353991, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_ecd92d588f401741b0da33ef048de6e9 | p@chr8:57353804..57353821, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_ecd92d588f401741b0da33ef048de6e9 | p@chr8:57354360..57354367, + |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_ecd92d588f401741b0da33ef048de6e9 | p@chr8:57353804..57353821, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_ecd92d588f401741b0da33ef048de6e9 | p@chr8:57353982..57353991, - |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_ecd92d588f401741b0da33ef048de6e9 | p@chr8:57354360..57354367, + |
| 9.99e-30 | FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_beeb77c190ba46fbd418b0e33879f05b | p7@SHOX2 |
| 9.99e-30 | FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_beeb77c190ba46fbd418b0e33879f05b | p10@ITGA8 |
| 9.99e-30 | FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_beeb77c190ba46fbd418b0e33879f05b | p10@ITGA8 |
| 9.99e-30 | FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_beeb77c190ba46fbd418b0e33879f05b | p7@SHOX2 |
| 1.33e-29 | FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_3b6a1f218a6246abc8274a82baa95f14 | p@chr22:28193943..28193956, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_3b6a1f218a6246abc8274a82baa95f14 | p@chrX:132670143..132670152, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_3b6a1f218a6246abc8274a82baa95f14 | p@chr17:79071218..79071221, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_3b6a1f218a6246abc8274a82baa95f14 | p@chr22:28193943..28193956, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_3b6a1f218a6246abc8274a82baa95f14 | p@chrX:132670143..132670152, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_3b6a1f218a6246abc8274a82baa95f14 | p@chr17:79071218..79071221, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_a6a3e17471ee232e7cd6555a9f636a0e | p@chr1:21904551..21904569, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_a6a3e17471ee232e7cd6555a9f636a0e | p@chr1:21904551..21904569, - |
| 3.16e-29 | FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_8f83b5f57cf8df5d24b8d8e501512fc2 | p@chr8:57359975..57359992, - |
| 3.16e-29 | FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_8f83b5f57cf8df5d24b8d8e501512fc2 | p18@MEF2D |
| 3.16e-29 | FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_8f83b5f57cf8df5d24b8d8e501512fc2 | p@chr14:89044406..89044416, + |
| 3.16e-29 | FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_8f83b5f57cf8df5d24b8d8e501512fc2 | p@chr8:57359975..57359992, - |
| 3.16e-29 | FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_8f83b5f57cf8df5d24b8d8e501512fc2 | p@chr14:89044406..89044416, + |
| 3.16e-29 | FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_8f83b5f57cf8df5d24b8d8e501512fc2 | p18@MEF2D |
| 4.2e-29 | FFCP PHASE1:Hg19::chr4:151503350..151503358,+#_d6c6e1e7bdf2e86e6ff92746a2623125 | p11@MAB21L2 |
| 4.2e-29 | FFCP PHASE2:Hg19::chr13:36046127..36046134,+#_d6c6e1e7bdf2e86e6ff92746a2623125 | p@chr13:36046127..36046134, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Cranial neural crest that is part of the hindbrain.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
