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UBERON:0005985: Difference between revisions

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Line 13: Line 13:
|located_in=
|located_in=
|name=coronary vessel
|name=coronary vessel
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0000948
|part_of=UBERON:0000948

Latest revision as of 17:56, 12 September 2014

Name:coronary vessel
Namespace:FANTOM
Definition:"any of the arteries or veins that supply blood to the heart or return blood from the heart muscles to the circulation" [MP:0010551]
Xrefs:
links:
MESH:A.07.231.114.269
Comments:TODO - change relation from part_of

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000055(vessel),UBERON:0004120(mesoderm-derived structure)
part_of:UBERON:0000948(heart)



Children

is a:UBERON:0003498 (heart blood vessel)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 11286-116I8 (Smooth Muscle Cells - Coronary Artery, donor1)
  • 11363-117I4 (Smooth Muscle Cells - Coronary Artery, donor2)
  • 11435-118H4 (Smooth Muscle Cells - Coronary Artery, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005985 (coronary vessel), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data