UBERON:0006514: Difference between revisions
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|located_in= | |located_in= | ||
|name=pallidum | |name=pallidum | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002420 | |part_of=UBERON:0002420 | ||
Latest revision as of 17:57, 12 September 2014
| Name: | pallidum | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Part of what are called the basal ganglia of the brain which consist of the globus pallidus and the ventral pallidum." [http://www.medterms.com/script/main/art.asp?articlekey | ||
| Xrefs: |
| ||
| Synonyms: |
"neuraxis pallidum" EXACT [FMA:83684] "pallidum of neuraxis" EXACT [FMA:83684] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003528(brain grey matter) |
|---|---|
| part_of: | UBERON:0002420(basal ganglion) |
Children
| part of: | UBERON:0001875 (globus pallidus) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10161-103A8 (globus pallidus, adult, donor10252)
- 10175-103C4 (globus pallidus - adult, donor10196)
- 10364-105F4 (globus pallidus, newborn, donor10223)
- 10367-105F7 (globus pallidus, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006514 (pallidum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:25281776..25281779,-#_fcdca617c822f176b0920fb665af5ebb | p1@GNRH1 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:25281776..25281779,-#_fcdca617c822f176b0920fb665af5ebb | p1@GNRH1 |
| 2.34e-79 | FFCP PHASE2:Hg19::chr4:16728994..16729009,+#_7cb551099be96768f1bbc050be1b21c5 | p@chr4:16728994..16729009, + |
| 2.34e-79 | FFCP PHASE1:Hg19::chr8:112039724..112039729,-#_7cb551099be96768f1bbc050be1b21c5 | p5@ENST00000524283 |
| 2.34e-79 | FFCP PHASE1:Hg19::chr4:16728994..16729009,+#_7cb551099be96768f1bbc050be1b21c5 | p@chr4:16728994..16729009, + |
| 2.34e-79 | FFCP PHASE2:Hg19::chr8:112039724..112039729,-#_7cb551099be96768f1bbc050be1b21c5 | p5@ENST00000524283 |
| 5.22e-79 | FFCP PHASE1:Hg19::chr5:60933634..60933637,+#_c2517cdfd5aae29ba7f221991615fee5 | p4@C5orf64 |
| 5.22e-79 | FFCP PHASE2:Hg19::chr5:60933634..60933637,+#_c2517cdfd5aae29ba7f221991615fee5 | p4@C5orf64 |
| 2.84e-66 | FFCP PHASE1:Hg19::chr8:53314470..53314473,-#_75799ce66d10c83d8eafac9143deaf3d | p@chr8:53314470..53314473, - |
| 2.84e-66 | FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_75799ce66d10c83d8eafac9143deaf3d | p@chr8:57353676..57353688, - |
| 2.84e-66 | FFCP PHASE2:Hg19::chr8:53314470..53314473,-#_75799ce66d10c83d8eafac9143deaf3d | p@chr8:53314470..53314473, - |
| 2.84e-66 | FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_75799ce66d10c83d8eafac9143deaf3d | p@chr8:57353676..57353688, - |
| 3.58e-57 | FFCP PHASE2:Hg19::chr12:57979084..57979088,+#_4bf07519dc6a1aa2558dc5e11d2fc587 | p5@uc001sos.2 |
| 3.58e-57 | FFCP PHASE1:Hg19::chr12:57979084..57979088,+#_4bf07519dc6a1aa2558dc5e11d2fc587 | p5@uc001sos.2 |
| 4.77e-57 | FFCP PHASE2:Hg19::chr14:68030467..68030470,+#_a39d031121e397acf5346f99d1641039 | p@chr14:68030467..68030470, + |
| 4.77e-57 | FFCP PHASE1:Hg19::chr14:68030467..68030470,+#_a39d031121e397acf5346f99d1641039 | p@chr14:68030467..68030470, + |
| 6.36e-57 | FFCP PHASE1:Hg19::chr2:234077664..234077672,+#_3ecfba0a4d674f4b59ed3b93650b15ac | p@chr2:234077664..234077672, + |
| 6.36e-57 | FFCP PHASE2:Hg19::chr2:234077664..234077672,+#_3ecfba0a4d674f4b59ed3b93650b15ac | p@chr2:234077664..234077672, + |
| 2.0e-56 | FFCP PHASE1:Hg19::chr2:7112752..7112770,+#_1fc8b47a8397ffebdd4f4ea9cc8c96bf | p@chr2:7112752..7112770, + |
| 2.0e-56 | FFCP PHASE1:Hg19::chr22:27727810..27727817,+#_1fc8b47a8397ffebdd4f4ea9cc8c96bf | p3@ENST00000413244 |
| 2.0e-56 | FFCP PHASE2:Hg19::chr22:27727810..27727817,+#_1fc8b47a8397ffebdd4f4ea9cc8c96bf | p3@ENST00000413244 |
| 2.0e-56 | FFCP PHASE2:Hg19::chr2:7112752..7112770,+#_1fc8b47a8397ffebdd4f4ea9cc8c96bf | p@chr2:7112752..7112770, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr2:211384439..211384442,+#_35b2696ea2174e0b840411fe81db4fc4 | p@chr2:211384439..211384442, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr2:211384439..211384442,+#_35b2696ea2174e0b840411fe81db4fc4 | p@chr2:211384439..211384442, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr1:65776926..65776928,+#_3ec27225d118cbfba838994e5a4bbfd9 | p@chr1:65776926..65776928, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr1:65776926..65776928,+#_3ec27225d118cbfba838994e5a4bbfd9 | p@chr1:65776926..65776928, + |
| 4.0e-50 | FFCP PHASE1:Hg19::chr2:44994986..44994992,-#_5e3a55b1f2015b2654b0f39a143a3e79 | p@chr2:44994986..44994992, - |
| 4.0e-50 | FFCP PHASE2:Hg19::chr2:44994986..44994992,-#_5e3a55b1f2015b2654b0f39a143a3e79 | p@chr2:44994986..44994992, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr3:196731042..196731058,-#_54924227c21d8d9b8fb6aa86b2326f9e | p6@MFI2 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr7:11676048..11676067,-#_54924227c21d8d9b8fb6aa86b2326f9e | p23@THSD7A |
| 4.52e-50 | FFCP PHASE1:Hg19::chr4:16729019..16729026,+#_54924227c21d8d9b8fb6aa86b2326f9e | p@chr4:16729019..16729026, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr3:196731042..196731058,-#_54924227c21d8d9b8fb6aa86b2326f9e | p6@MFI2 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr9:88473657..88473661,+#_54924227c21d8d9b8fb6aa86b2326f9e | p@chr9:88473657..88473661, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr4:16729019..16729026,+#_54924227c21d8d9b8fb6aa86b2326f9e | p@chr4:16729019..16729026, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chrX:2291152..2291163,-#_54924227c21d8d9b8fb6aa86b2326f9e | p@chrX:2291152..2291163, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr12:79843826..79843829,+#_54924227c21d8d9b8fb6aa86b2326f9e | p@chr12:79843826..79843829, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:160111883..160111891,+#_54924227c21d8d9b8fb6aa86b2326f9e | p@chr1:160111883..160111891, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr12:79843826..79843829,+#_54924227c21d8d9b8fb6aa86b2326f9e | p@chr12:79843826..79843829, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr9:88473657..88473661,+#_54924227c21d8d9b8fb6aa86b2326f9e | p@chr9:88473657..88473661, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:110546475..110546482,+#_54924227c21d8d9b8fb6aa86b2326f9e | p27@AHCYL1 |
| 4.52e-50 | FFCP PHASE2:Hg19::chrX:2291152..2291163,-#_54924227c21d8d9b8fb6aa86b2326f9e | p@chrX:2291152..2291163, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr7:11676048..11676067,-#_54924227c21d8d9b8fb6aa86b2326f9e | p23@THSD7A |
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:160111883..160111891,+#_54924227c21d8d9b8fb6aa86b2326f9e | p@chr1:160111883..160111891, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:110546475..110546482,+#_54924227c21d8d9b8fb6aa86b2326f9e | p27@AHCYL1 |
| 5.15e-50 | FFCP PHASE2:Hg19::chr15:30305145..30305156,+#_6b9ab164aab0a0cc2abaf96f6d33e8d9 | p@chr15:30305145..30305156, + |
| 5.15e-50 | FFCP PHASE1:Hg19::chr15:30305145..30305156,+#_6b9ab164aab0a0cc2abaf96f6d33e8d9 | p@chr15:30305145..30305156, + |
| 8.5e-50 | FFCP PHASE1:Hg19::chr20:45062233..45062265,+#_778487169797adfdda939adaa449343a | p1@AK054905 |
| 8.5e-50 | FFCP PHASE2:Hg19::chr20:45062233..45062265,+#_778487169797adfdda939adaa449343a | p1@AK054905 |
| 1.09e-49 | FFCP PHASE1:Hg19::chr11:18765839..18765846,-#_31c852b608e4f5dc118ee04fe2b957b9 | p10@PTPN5 |
| 1.09e-49 | FFCP PHASE2:Hg19::chr11:18765839..18765846,-#_31c852b608e4f5dc118ee04fe2b957b9 | p10@PTPN5 |
| 2.04e-45 | FFCP PHASE1:Hg19::chr3:42687264..42687266,-#_2a5e59d3e97e1124d0eb5f8c3448498b | p@chr3:42687264..42687266, - |
| 2.04e-45 | FFCP PHASE2:Hg19::chr3:42687264..42687266,-#_2a5e59d3e97e1124d0eb5f8c3448498b | p@chr3:42687264..42687266, - |
| 7.83e-45 | FFCP PHASE1:Hg19::chr4:648979..648991,-#_ac36395ac55d5068f2ed7a904a04b293 | p1@ENST00000489312 |
| 7.83e-45 | FFCP PHASE2:Hg19::chr1:109924481..109924486,-#_ac36395ac55d5068f2ed7a904a04b293 | p@chr1:109924481..109924486, - |
| 7.83e-45 | FFCP PHASE2:Hg19::chr4:648979..648991,-#_ac36395ac55d5068f2ed7a904a04b293 | p1@ENST00000489312 |
| 7.83e-45 | FFCP PHASE1:Hg19::chr7:92123292..92123295,+#_ac36395ac55d5068f2ed7a904a04b293 | p@chr7:92123292..92123295, + |
| 7.83e-45 | FFCP PHASE1:Hg19::chr1:109924481..109924486,-#_ac36395ac55d5068f2ed7a904a04b293 | p@chr1:109924481..109924486, - |
| 7.83e-45 | FFCP PHASE2:Hg19::chr7:92123292..92123295,+#_ac36395ac55d5068f2ed7a904a04b293 | p@chr7:92123292..92123295, + |
| 9.79e-45 | FFCP PHASE1:Hg19::chr8:53313114..53313126,-#_30f25d9d821c2ef09c7c89198d38e7b7 | p@chr8:53313114..53313126, - |
| 9.79e-45 | FFCP PHASE2:Hg19::chr8:53313114..53313126,-#_30f25d9d821c2ef09c7c89198d38e7b7 | p@chr8:53313114..53313126, - |
| 1.22e-44 | FFCP PHASE2:Hg19::chr3:16851273..16851310,+#_29a14953f0998f34b7604f85c25138e0 | p@chr3:16851273..16851310, + |
| 1.22e-44 | FFCP PHASE1:Hg19::chr7:67899920..67899958,-#_29a14953f0998f34b7604f85c25138e0 | p@chr7:67899920..67899958, - |
| 1.22e-44 | FFCP PHASE1:Hg19::chr8:53312268..53312283,-#_29a14953f0998f34b7604f85c25138e0 | p@chr8:53312268..53312283, - |
| 1.22e-44 | FFCP PHASE2:Hg19::chr8:53312268..53312283,-#_29a14953f0998f34b7604f85c25138e0 | p@chr8:53312268..53312283, - |
| 1.22e-44 | FFCP PHASE2:Hg19::chr7:67899920..67899958,-#_29a14953f0998f34b7604f85c25138e0 | p@chr7:67899920..67899958, - |
| 1.22e-44 | FFCP PHASE1:Hg19::chr3:16851273..16851310,+#_29a14953f0998f34b7604f85c25138e0 | p@chr3:16851273..16851310, + |
| 1.53e-44 | FFCP PHASE1:Hg19::chr11:26495447..26495461,+#_2e57326e6161ca889d37e26403b111b5 | p5@ANO3 |
| 1.53e-44 | FFCP PHASE2:Hg19::chr11:26495447..26495461,+#_2e57326e6161ca889d37e26403b111b5 | p5@ANO3 |
| 1.53e-44 | FFCP PHASE1:Hg19::chrX:119589796..119589800,-#_2e57326e6161ca889d37e26403b111b5 | p@chrX:119589796..119589800, - |
| 1.53e-44 | FFCP PHASE2:Hg19::chrX:119589796..119589800,-#_2e57326e6161ca889d37e26403b111b5 | p@chrX:119589796..119589800, - |
| 1.91e-44 | FFCP PHASE2:Hg19::chr17:19390234..19390251,+#_293fedc4198402bccca13e66349aa38c | p@chr17:19390234..19390251, + |
| 1.91e-44 | FFCP PHASE1:Hg19::chr5:148442824..148442835,+#_293fedc4198402bccca13e66349aa38c | p4@ENST00000515519 |
| 1.91e-44 | FFCP PHASE1:Hg19::chr7:35756400..35756409,+#_293fedc4198402bccca13e66349aa38c | p4@ENST00000458087, p4@uc003tew.1 |
| 1.91e-44 | FFCP PHASE2:Hg19::chr5:148442824..148442835,+#_293fedc4198402bccca13e66349aa38c | p4@ENST00000515519 |
| 1.91e-44 | FFCP PHASE2:Hg19::chr7:35756400..35756409,+#_293fedc4198402bccca13e66349aa38c | p4@ENST00000458087, p4@uc003tew.1 |
| 1.91e-44 | FFCP PHASE1:Hg19::chr9:139907538..139907555,-#_293fedc4198402bccca13e66349aa38c | p25@ABCA2 |
| 1.91e-44 | FFCP PHASE1:Hg19::chr17:19390234..19390251,+#_293fedc4198402bccca13e66349aa38c | p@chr17:19390234..19390251, + |
| 1.91e-44 | FFCP PHASE2:Hg19::chr9:139907538..139907555,-#_293fedc4198402bccca13e66349aa38c | p25@ABCA2 |
| 2.98e-44 | FFCP PHASE2:Hg19::chr3:50306390..50306399,+#_cdb24e23965af03eabfef9555b0bf12a | p8@SEMA3B |
| 2.98e-44 | FFCP PHASE1:Hg19::chr3:35722978..35722999,+#_cdb24e23965af03eabfef9555b0bf12a | p28@ARPP21 |
| 2.98e-44 | FFCP PHASE2:Hg19::chr3:35722978..35722999,+#_cdb24e23965af03eabfef9555b0bf12a | p28@ARPP21 |
| 2.98e-44 | FFCP PHASE1:Hg19::chr3:50306390..50306399,+#_cdb24e23965af03eabfef9555b0bf12a | p8@SEMA3B |
| 1.34e-40 | FFCP PHASE1:Hg19::chr19:35789028..35789044,+#_0a5aba0d677de034908ef16c239f496f | p@chr19:35789028..35789044, + |
| 1.34e-40 | FFCP PHASE2:Hg19::chr19:35789028..35789044,+#_0a5aba0d677de034908ef16c239f496f | p@chr19:35789028..35789044, + |
| 2.01e-40 | FFCP PHASE1:Hg19::chr6:166076645..166076657,-#_6d1bd0e11699ae7602ca76a79f5af94c | p@chr6:166076645..166076657, - |
| 2.01e-40 | FFCP PHASE2:Hg19::chr6:166076645..166076657,-#_6d1bd0e11699ae7602ca76a79f5af94c | p@chr6:166076645..166076657, - |
| 2.46e-40 | FFCP PHASE2:Hg19::chr16:51302023..51302029,-#_d5bd6e1f74ac29acdc8e92c4f68478cd | p@chr16:51302023..51302029, - |
| 2.46e-40 | FFCP PHASE1:Hg19::chr16:51302023..51302029,-#_d5bd6e1f74ac29acdc8e92c4f68478cd | p@chr16:51302023..51302029, - |
| 3.01e-40 | FFCP PHASE1:Hg19::chr11:119846813..119846826,+#_f63fca0cad51c568a0beeb6297693110 | p@chr11:119846813..119846826, + |
| 3.01e-40 | FFCP PHASE2:Hg19::chr11:119846813..119846826,+#_f63fca0cad51c568a0beeb6297693110 | p@chr11:119846813..119846826, + |
| 3.68e-40 | FFCP PHASE2:Hg19::chr22:27727719..27727726,+#_70fe223d9776c56246d6d88088a66448 | p2@ENST00000413244 |
| 3.68e-40 | FFCP PHASE1:Hg19::chr11:18765589..18765610,-#_70fe223d9776c56246d6d88088a66448 | p6@PTPN5 |
| 3.68e-40 | FFCP PHASE2:Hg19::chr11:18765589..18765610,-#_70fe223d9776c56246d6d88088a66448 | p6@PTPN5 |
| 3.68e-40 | FFCP PHASE1:Hg19::chr22:27727719..27727726,+#_70fe223d9776c56246d6d88088a66448 | p2@ENST00000413244 |
| 4.49e-40 | FFCP PHASE2:Hg19::chr6:33161034..33161047,-#_52d059b90af7dd5d02e7bc0d1de4580c | p@chr6:33161034..33161047, - |
| 4.49e-40 | FFCP PHASE1:Hg19::chr1:84413166..84413168,-#_52d059b90af7dd5d02e7bc0d1de4580c | p4@TTLL7 |
| 4.49e-40 | FFCP PHASE1:Hg19::chr22:50431522..50431538,-#_52d059b90af7dd5d02e7bc0d1de4580c | p@chr22:50431522..50431538, - |
| 4.49e-40 | FFCP PHASE2:Hg19::chr1:84413166..84413168,-#_52d059b90af7dd5d02e7bc0d1de4580c | p4@TTLL7 |
| 4.49e-40 | FFCP PHASE2:Hg19::chr22:50431522..50431538,-#_52d059b90af7dd5d02e7bc0d1de4580c | p@chr22:50431522..50431538, - |
| 4.49e-40 | FFCP PHASE1:Hg19::chr6:33161034..33161047,-#_52d059b90af7dd5d02e7bc0d1de4580c | p@chr6:33161034..33161047, - |
