UBERON:0006965: Difference between revisions
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|located_in= | |located_in= | ||
|name=vascular cord | |name=vascular cord | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0014903 | |part_of=UBERON:0014903 | ||
Latest revision as of 17:59, 12 September 2014
| Name: | vascular cord | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The vascular cord is the primordial vasculature that will develop into blood vessels by the process of tubulogenesis[GO]. The vascular cord is composed of angioblast or vascular endothelial cells in a solid linear mass called a cord. The cord then undergoes tubulogenesis to form the lumen of the vessels[ZFA]." [GO:0072360, ZFA:0005077] | ||
| Xrefs: |
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Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005423(developing anatomical structure) |
|---|---|
| part_of: | UBERON:0014903(primordial vasculature) |
Children
| develops from: | UBERON:0001981 (blood vessel) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006965 (vascular cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.37e-99 | FFCP PHASE1:Hg19::chr8:55370720..55370733,+#_b913e9dc8913bf229ce06fcdf393cf13 | p2@SOX17 |
| 4.37e-99 | FFCP PHASE2:Hg19::chr8:55370720..55370733,+#_b913e9dc8913bf229ce06fcdf393cf13 | p2@SOX17 |
| 3.03e-83 | FFCP PHASE2:Hg19::chr12:96830430..96830450,+#_200bbf89388f7526f788e7a6d6ef08b0 | p@chr12:96830430..96830450, + |
| 3.03e-83 | FFCP PHASE1:Hg19::chr12:96830430..96830450,+#_200bbf89388f7526f788e7a6d6ef08b0 | p@chr12:96830430..96830450, + |
| 9.39e-72 | FFCP PHASE2:Hg19::chr4:70653649..70653665,-#_9535d6e5a9651d04ff45c440fceed6a7 | p4@SULT1B1 |
| 9.39e-72 | FFCP PHASE1:Hg19::chr4:70653649..70653665,-#_9535d6e5a9651d04ff45c440fceed6a7 | p4@SULT1B1 |
| 1.22e-71 | FFCP PHASE2:Hg19::chr22:21138343..21138378,+#_135c8d5560e76a0d9a80391c3076bfb9 | p@chr22:21138343..21138378, + |
| 1.22e-71 | FFCP PHASE1:Hg19::chr22:21138343..21138378,+#_135c8d5560e76a0d9a80391c3076bfb9 | p@chr22:21138343..21138378, + |
| 3.75e-70 | FFCP PHASE1:Hg19::chr4:70653673..70653688,-#_fc2a06ab8870509917de207dfc829571 | p3@SULT1B1 |
| 3.75e-70 | FFCP PHASE2:Hg19::chr4:70653673..70653688,-#_fc2a06ab8870509917de207dfc829571 | p3@SULT1B1 |
| 4.26e-70 | FFCP PHASE2:Hg19::chr3:30334038..30334060,+#_71091439963c7c985e77e02e19557e25 | p@chr3:30334038..30334060, + |
| 4.26e-70 | FFCP PHASE1:Hg19::chr3:30334038..30334060,+#_71091439963c7c985e77e02e19557e25 | p@chr3:30334038..30334060, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_792fb79b008c6e00e5b5573313eb4812 | p6@Npy1r |
| 1.65e-69 | FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_792fb79b008c6e00e5b5573313eb4812 | p6@Npy1r |
| 3.42e-69 | FFCP PHASE2:Hg19::chr7:22629318..22629324,+#_f80a85af9fcc3e12d37906d10596f903 | p1@ENST00000439823 |
| 3.42e-69 | FFCP PHASE1:Hg19::chr7:22629318..22629324,+#_f80a85af9fcc3e12d37906d10596f903 | p1@ENST00000439823 |
| 1.32e-66 | FFCP PHASE2:Hg19::chr5:54281535..54281547,-#_e3d2951e659caad85f4666840da03c6c | p2@ESM1 |
| 1.32e-66 | FFCP PHASE1:Hg19::chr5:54281535..54281547,-#_e3d2951e659caad85f4666840da03c6c | p2@ESM1 |
| 1.79e-66 | FFCP PHASE2:Hg19::chr1:186946626..186946652,+#_39ac3d6537f52fae9407ed4ac89f2e83 | p@chr1:186946626..186946652, + |
| 1.79e-66 | FFCP PHASE1:Hg19::chr1:186946626..186946652,+#_39ac3d6537f52fae9407ed4ac89f2e83 | p@chr1:186946626..186946652, + |
| 2.82e-66 | FFCP PHASE1:Hg19::chr1:21606171..21606188,-#_e4cf60432cda130112a19d2a4f0d1511 | p10@ECE1 |
| 2.82e-66 | FFCP PHASE2:Hg19::chr1:21606171..21606188,-#_e4cf60432cda130112a19d2a4f0d1511 | p10@ECE1 |
| 1.57e-65 | FFCP PHASE2:Hg19::chr4:145567563..145567572,+#_016654caf94772431c750cc76a7dc3e0 | p8@HHIP |
| 1.57e-65 | FFCP PHASE1:Hg19::chr4:145567563..145567572,+#_016654caf94772431c750cc76a7dc3e0 | p8@HHIP |
| 4.84e-64 | FFCP PHASE1:Hg19::chr10:4823096..4823144,-#_3a34a81bf760d4ae58f959618890da96 | p@chr10:4823096..4823144, - |
| 4.84e-64 | FFCP PHASE2:Hg19::chr10:4823096..4823144,-#_3a34a81bf760d4ae58f959618890da96 | p@chr10:4823096..4823144, - |
| 1.6e-63 | FFCP PHASE1:Hg19::chr4:145566841..145566862,+#_595bb79dcc90acf279df53462f8fc6a3 | p10@HHIP |
| 1.6e-63 | FFCP PHASE2:Hg19::chr4:145566841..145566862,+#_595bb79dcc90acf279df53462f8fc6a3 | p10@HHIP |
| 1.6e-62 | FFCP PHASE2:Hg19::chr22:21138313..21138336,+#_ba03282307c61f0748cd4313329b008b | p@chr22:21138313..21138336, + |
| 1.6e-62 | FFCP PHASE1:Hg19::chr22:21138313..21138336,+#_ba03282307c61f0748cd4313329b008b | p@chr22:21138313..21138336, + |
| 3.56e-60 | FFCP PHASE2:Hg19::chr11:102668200..102668228,-#_6bf52174b75c728948a4eb77da99daab | p4@MMP1 |
| 3.56e-60 | FFCP PHASE1:Hg19::chr11:102668200..102668228,-#_6bf52174b75c728948a4eb77da99daab | p4@MMP1 |
| 1.21e-59 | FFCP PHASE1:Hg19::chr4:145567374..145567390,+#_e2ce049ed4f600cb69af1a2ab44ac3ff | p6@HHIP |
| 1.21e-59 | FFCP PHASE2:Hg19::chr4:145567374..145567390,+#_e2ce049ed4f600cb69af1a2ab44ac3ff | p6@HHIP |
| 1.43e-59 | FFCP PHASE2:Hg19::chr5:54281512..54281517,-#_27f1b9fce5ab22be0073df3e31f87cd5 | p4@ESM1 |
| 1.43e-59 | FFCP PHASE1:Hg19::chr5:54281512..54281517,-#_27f1b9fce5ab22be0073df3e31f87cd5 | p4@ESM1 |
| 7.93e-59 | FFCP PHASE2:Hg19::chr4:145567426..145567455,+#_eb30122ded6b5defa5f92116e558f108 | p5@HHIP |
| 7.93e-59 | FFCP PHASE1:Hg19::chr4:145567426..145567455,+#_eb30122ded6b5defa5f92116e558f108 | p5@HHIP |
| 1.41e-58 | FFCP PHASE1:Hg19::chr3:149258838..149258848,-#_7966385a34d7eb30a73e9602538287bd | p24@WWTR1 |
| 1.41e-58 | FFCP PHASE2:Hg19::chr3:149258838..149258848,-#_7966385a34d7eb30a73e9602538287bd | p24@WWTR1 |
| 5.62e-58 | FFCP PHASE1:Hg19::chr11:86649508..86649546,-#_8c10462fb23352e69ce75e06a64bfc06 | p@chr11:86649508..86649546, - |
| 5.62e-58 | FFCP PHASE2:Hg19::chr11:86649508..86649546,-#_8c10462fb23352e69ce75e06a64bfc06 | p@chr11:86649508..86649546, - |
| 8.9e-57 | FFCP PHASE2:Hg19::chr4:145567391..145567425,+#_858fafde64c3199ee3e91e633eaf7b1c | p4@HHIP |
| 8.9e-57 | FFCP PHASE1:Hg19::chr4:145567391..145567425,+#_858fafde64c3199ee3e91e633eaf7b1c | p4@HHIP |
| 4.2e-56 | FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_3a309fc0bdb76a918f5c4dcfe575cb2c | p4@Il6st |
| 4.2e-56 | FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_3a309fc0bdb76a918f5c4dcfe575cb2c | p5@Npy1r |
| 4.2e-56 | FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_3a309fc0bdb76a918f5c4dcfe575cb2c | p4@Il6st |
| 4.2e-56 | FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_3a309fc0bdb76a918f5c4dcfe575cb2c | p5@Npy1r |
| 4.77e-56 | FFCP PHASE2:Hg19::chr4:145567356..145567368,+#_62203b5a12f18ad1948028dfb357b1df | p7@HHIP |
| 4.77e-56 | FFCP PHASE1:Hg19::chr4:145567356..145567368,+#_62203b5a12f18ad1948028dfb357b1df | p7@HHIP |
| 1.07e-55 | FFCP PHASE2:Hg19::chr11:102667477..102667490,-#_173fec449deca11db474f55674977ca6 | p@chr11:102667477..102667490, - |
| 1.07e-55 | FFCP PHASE1:Hg19::chr11:102667477..102667490,-#_173fec449deca11db474f55674977ca6 | p@chr11:102667477..102667490, - |
| 1.11e-55 | FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_d32cefbadae9d013d67e341e860191a8 | p@chr2:65009852..65009866, - |
| 1.11e-55 | FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_d32cefbadae9d013d67e341e860191a8 | p@chr2:65009852..65009866, - |
| 2.0e-55 | FFCP PHASE2:Hg19::chr11:102668178..102668206,+#_9fec100729c2e61fa19520e13c0d157b | p@chr11:102668178..102668206, + |
| 2.0e-55 | FFCP PHASE1:Hg19::chr11:102668178..102668206,+#_9fec100729c2e61fa19520e13c0d157b | p@chr11:102668178..102668206, + |
| 9.51e-55 | FFCP PHASE2:Hg19::chr4:86700590..86700615,+#_e81e283b9fee75f828a3a18411946829 | p@chr4:86700590..86700615, + |
| 9.51e-55 | FFCP PHASE1:Hg19::chr4:86700590..86700615,+#_e81e283b9fee75f828a3a18411946829 | p@chr4:86700590..86700615, + |
| 1.16e-54 | FFCP PHASE1:Hg19::chr14:63671393..63671437,+#_3bf04f5d1660510816d5b398b0ee3656 | p2@RHOJ |
| 1.16e-54 | FFCP PHASE2:Hg19::chr14:63671393..63671437,+#_3bf04f5d1660510816d5b398b0ee3656 | p2@RHOJ |
| 5.43e-54 | FFCP PHASE1:Hg19::chr11:102662162..102662217,-#_9fb9eff841dafb88a5e2176ddc2e649d | p@chr11:102662162..102662217, - |
| 5.43e-54 | FFCP PHASE2:Hg19::chr11:102662162..102662217,-#_9fb9eff841dafb88a5e2176ddc2e649d | p@chr11:102662162..102662217, - |
| 1.56e-53 | FFCP PHASE2:Hg19::chr11:102668074..102668126,-#_d3382fef4f078899a2cad8d134fe67e5 | p3@MMP1 |
| 1.56e-53 | FFCP PHASE1:Hg19::chr11:102668074..102668126,-#_d3382fef4f078899a2cad8d134fe67e5 | p3@MMP1 |
| 2.27e-53 | FFCP PHASE2:Hg19::chr11:128562673..128562716,-#_411e1a18538a32da3674e47c07907b55 | p@chr11:128562673..128562716, - |
| 2.27e-53 | FFCP PHASE1:Hg19::chr11:128562673..128562716,-#_411e1a18538a32da3674e47c07907b55 | p@chr11:128562673..128562716, - |
| 5.18e-53 | FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_c81949b85b9c4478c433f33fb895d784 | p@chr4:7846444..7846449, - |
| 5.18e-53 | FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_c81949b85b9c4478c433f33fb895d784 | p@chr4:7846444..7846449, - |
| 1.64e-52 | FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_59b3be80ecb8f91c48f4098cae8b82f4 | p@chr17:87574327..87574332, + |
| 1.64e-52 | FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_59b3be80ecb8f91c48f4098cae8b82f4 | p@chr8:69228447..69228492, + |
| 1.64e-52 | FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_59b3be80ecb8f91c48f4098cae8b82f4 | p5@Adamts2 |
| 1.64e-52 | FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_59b3be80ecb8f91c48f4098cae8b82f4 | p@chr8:69228447..69228492, + |
| 1.64e-52 | FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_59b3be80ecb8f91c48f4098cae8b82f4 | p@chr2:178190171..178190178, + |
| 1.64e-52 | FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_59b3be80ecb8f91c48f4098cae8b82f4 | p@chr2:112043522..112043530, - |
| 1.64e-52 | FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_59b3be80ecb8f91c48f4098cae8b82f4 | p@chrX:160839744..160839754, + |
| 1.64e-52 | FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_59b3be80ecb8f91c48f4098cae8b82f4 | p@chr17:14827154..14827169, - |
| 1.64e-52 | FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_59b3be80ecb8f91c48f4098cae8b82f4 | p@chr17:14802633..14802637, - |
| 1.64e-52 | FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_59b3be80ecb8f91c48f4098cae8b82f4 | p@chr2:178190171..178190178, + |
| 1.64e-52 | FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_59b3be80ecb8f91c48f4098cae8b82f4 | p@chr17:14802633..14802637, - |
| 1.64e-52 | FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_59b3be80ecb8f91c48f4098cae8b82f4 | p@chr17:14827154..14827169, - |
| 1.64e-52 | FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_59b3be80ecb8f91c48f4098cae8b82f4 | p@chr2:112043522..112043530, - |
| 1.64e-52 | FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_59b3be80ecb8f91c48f4098cae8b82f4 | p5@Adamts2 |
| 1.64e-52 | FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_59b3be80ecb8f91c48f4098cae8b82f4 | p@chrX:160839744..160839754, + |
| 1.64e-52 | FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_59b3be80ecb8f91c48f4098cae8b82f4 | p@chr17:87574327..87574332, + |
| 4.12e-52 | FFCP PHASE2:Hg19::chr11:102668016..102668028,-#_50deb1786d4173efde2e39fc27b534aa | p5@MMP1 |
| 4.12e-52 | FFCP PHASE1:Hg19::chr11:102668016..102668028,-#_50deb1786d4173efde2e39fc27b534aa | p5@MMP1 |
| 9.8e-52 | FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_be9bd30d847261ed1db373adfb43e8ca | p@chr11:102661517..102661541, - |
| 9.8e-52 | FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_be9bd30d847261ed1db373adfb43e8ca | p@chr11:102661517..102661541, - |
| 1.64e-51 | FFCP PHASE1:Hg19::chr14:23236579..23236596,+#_3ceddd3133c15fd42e42f4e8b979b528 | p5@OXA1L |
| 1.64e-51 | FFCP PHASE2:Hg19::chr14:23236579..23236596,+#_3ceddd3133c15fd42e42f4e8b979b528 | p5@OXA1L |
| 2.14e-51 | FFCP PHASE2:Hg19::chr4:145567461..145567482,+#_b732de3a0b95ab42406116b7411ad68c | p9@HHIP |
| 2.14e-51 | FFCP PHASE1:Hg19::chr4:145567461..145567482,+#_b732de3a0b95ab42406116b7411ad68c | p9@HHIP |
| 6.64e-51 | FFCP PHASE2:Hg19::chr4:54931911..54931926,-#_3fccc9358e491fcae27f9245a23c7dde | p@chr4:54931911..54931926, - |
| 6.64e-51 | FFCP PHASE1:Hg19::chr4:54931911..54931926,-#_3fccc9358e491fcae27f9245a23c7dde | p@chr4:54931911..54931926, - |
| 7.65e-51 | FFCP PHASE1:Hg19::chr4:145567538..145567544,+#_47021fc04cb45254478bb0f1683bec6c | p13@HHIP |
| 7.65e-51 | FFCP PHASE2:Hg19::chr4:145567538..145567544,+#_47021fc04cb45254478bb0f1683bec6c | p13@HHIP |
| 2.55e-50 | FFCP PHASE2:Hg19::chr11:102668708..102668742,+#_c26c7d57fc4f4b945aa630872b327986 | p@chr11:102668708..102668742, + |
| 2.55e-50 | FFCP PHASE1:Hg19::chr11:102668708..102668742,+#_c26c7d57fc4f4b945aa630872b327986 | p@chr11:102668708..102668742, + |
| 7.98e-50 | FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_b3aa0fb740535df08139f2534e14ff40 | p@chr6:53359400..53359406, + |
| 7.98e-50 | FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_b3aa0fb740535df08139f2534e14ff40 | p@chr6:53359400..53359406, + |
