UBERON:0011249: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=appendicular skeletal system | |name=appendicular skeletal system | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 18:10, 12 September 2014
| Name: | appendicular skeletal system | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Subdivision of the skeletal system which consists of the appendicular skeleton plus associated joints." [UBERON:cjm] | ||
| Xrefs: |
|
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000075(subdivision of skeletal system) |
|---|
Children
| part of: | UBERON:0002091 (appendicular skeleton) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0011249 (appendicular skeletal system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.4e-49 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_b0bde04fc9d930a9d5b84801f8bd91dd | p26@Myo18a |
| 3.4e-49 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_b0bde04fc9d930a9d5b84801f8bd91dd | p26@Myo18a |
| 4.96e-49 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_cbabc9cced35d1a5b747867936cd3eae | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_cbabc9cced35d1a5b747867936cd3eae | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_cbabc9cced35d1a5b747867936cd3eae | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_cbabc9cced35d1a5b747867936cd3eae | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_cbabc9cced35d1a5b747867936cd3eae | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_cbabc9cced35d1a5b747867936cd3eae | p@chr9:21934585..21934591, - |
| 3.15e-44 | FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_271ab17e861652883e549b797021c167 | p@chr6:51525810..51525817, + |
| 3.15e-44 | FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_271ab17e861652883e549b797021c167 | p@chr6:51525810..51525817, + |
| 9.78e-40 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_f50096bbe9a33022a5a8bc3233978b03 | p@chr19:4876870..4876880, - |
| 9.78e-40 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_f50096bbe9a33022a5a8bc3233978b03 | p@chr19:4876870..4876880, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_8b2844d50c2011fcc0358d7e31f9ab94 | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_8b2844d50c2011fcc0358d7e31f9ab94 | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_8b2844d50c2011fcc0358d7e31f9ab94 | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_8b2844d50c2011fcc0358d7e31f9ab94 | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_8b2844d50c2011fcc0358d7e31f9ab94 | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_8b2844d50c2011fcc0358d7e31f9ab94 | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_8b2844d50c2011fcc0358d7e31f9ab94 | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_8b2844d50c2011fcc0358d7e31f9ab94 | p@chr6:4490674..4490679, + |
| 1.55e-39 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_9551be285c11d056e358de8eabfb6e65 | p@chr1:174143249..174143260, - |
| 1.55e-39 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_9551be285c11d056e358de8eabfb6e65 | p@chr1:174143249..174143260, - |
| 3.03e-39 | FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_d5c4f363dddd61c4d18a11d5215e734f | p@chr6:51525869..51525891, + |
| 3.03e-39 | FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_d5c4f363dddd61c4d18a11d5215e734f | p@chr6:51525869..51525891, + |
| 9.31e-39 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_272b1db41fc1e0d11c01c02562bb185c | p3@Asb16 |
| 9.31e-39 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_272b1db41fc1e0d11c01c02562bb185c | p3@Asb16 |
| 2.41e-35 | FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_c1876d97fe9fcb30259dfe69e160767d | p@chr7:133604286..133604297, - |
| 2.41e-35 | FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_c1876d97fe9fcb30259dfe69e160767d | p@chr7:133604286..133604297, - |
| 2.95e-35 | FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_085335a19e1aa197e36b22223d5d61fa | p5@Pla2g5 |
| 2.95e-35 | FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_085335a19e1aa197e36b22223d5d61fa | p5@Pla2g5 |
| 9.53e-34 | FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_7be31a2d309bfd1ca305a644b217ceea | p2@uc009mdq.1 |
| 9.53e-34 | FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_7be31a2d309bfd1ca305a644b217ceea | p2@uc009mdq.1 |
| 1.23e-33 | FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_273abaec81b8f4124a9a55c6b7a1b5c4 | p3@Mmp9 |
| 1.23e-33 | FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_273abaec81b8f4124a9a55c6b7a1b5c4 | p3@Mmp9 |
| 1.58e-33 | FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_1c27f2364f056e920707a2aa7a4c23ea | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_1c27f2364f056e920707a2aa7a4c23ea | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_1c27f2364f056e920707a2aa7a4c23ea | p@chr1:166815111..166815121, - |
| 1.58e-33 | FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_1c27f2364f056e920707a2aa7a4c23ea | p@chr1:166815111..166815121, - |
| 2.04e-33 | FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_19ceceefbcc2cefe845697544d7f86ce | p4@Lipc |
| 2.04e-33 | FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_19ceceefbcc2cefe845697544d7f86ce | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_19ceceefbcc2cefe845697544d7f86ce | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_19ceceefbcc2cefe845697544d7f86ce | p4@Lipc |
| 3.38e-33 | FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_64c0cb04eaaab4ca5b222a61e9df799c | p6@Sp7 |
| 3.38e-33 | FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_64c0cb04eaaab4ca5b222a61e9df799c | p6@Sp7 |
| 7.17e-33 | FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_892d180807b5cd72464801a797ab856a | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_892d180807b5cd72464801a797ab856a | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_892d180807b5cd72464801a797ab856a | p@chr18:76271498..76271508, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_892d180807b5cd72464801a797ab856a | p@chr18:76271498..76271508, + |
| 2.67e-30 | FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_ae6f0ebda4382e1f373c5e04b5159691 | p@chr2:32482387..32482399, + |
| 2.67e-30 | FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_ae6f0ebda4382e1f373c5e04b5159691 | p@chr2:32482387..32482399, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_7948f07ded3415873ddb3f23585a6688 | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_7948f07ded3415873ddb3f23585a6688 | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_7948f07ded3415873ddb3f23585a6688 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_7948f07ded3415873ddb3f23585a6688 | p@chr12:70396969..70396979, + |
| 1.46e-29 | FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_8090585d04d877c2dd718caf2c3f4cfb | p@chr7:133590998..133591009, - |
| 1.46e-29 | FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_8090585d04d877c2dd718caf2c3f4cfb | p@chr7:133590998..133591009, - |
| 1.73e-29 | FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_1c560bd16d1c580c307e9cf19783e501 | p2@Myoz3 |
| 1.73e-29 | FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_1c560bd16d1c580c307e9cf19783e501 | p2@Myoz3 |
| 2.42e-29 | FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_13d6f03711362502530e0f95df798ab5 | p2@Myh4 |
| 2.42e-29 | FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_13d6f03711362502530e0f95df798ab5 | p2@Myh4 |
| 7.46e-29 | FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_46a585db8b715743932105106c3596d0 | p@chr1:57155729..57155740, - |
| 7.46e-29 | FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_46a585db8b715743932105106c3596d0 | p@chr1:57155729..57155740, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_8dd0442d10b7ebb9a4249a6a6a063d33 | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_8dd0442d10b7ebb9a4249a6a6a063d33 | p1@Msmp |
| 9.26e-29 | FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_8dd0442d10b7ebb9a4249a6a6a063d33 | p1@Msmp |
| 9.26e-29 | FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_8dd0442d10b7ebb9a4249a6a6a063d33 | p@chr11:67056544..67056589, - |
| 1.15e-28 | FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_f789cd28e99de9b5adb477116a7ae266 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_f789cd28e99de9b5adb477116a7ae266 | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_f789cd28e99de9b5adb477116a7ae266 | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_f789cd28e99de9b5adb477116a7ae266 | p@chr6:90552017..90552024, + |
| 1.43e-28 | FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_ee396763ff06afb18abea87081329b32 | p@chr6:34436258..34436292, + |
| 1.43e-28 | FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_ee396763ff06afb18abea87081329b32 | p@chr6:34436258..34436292, + |
| 2.2e-28 | FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_5404635ec7abf384e0eedd5f7229b9f6 | p@chr11:67069796..67069817, - |
| 2.2e-28 | FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_5404635ec7abf384e0eedd5f7229b9f6 | p@chr11:67069796..67069817, - |
| 2.72e-28 | FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_439a05142800ea318b87e0d2171c9057 | p@chr8:107702369..107702386, + |
| 2.72e-28 | FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_439a05142800ea318b87e0d2171c9057 | p@chr8:107702369..107702386, + |
| 3.45e-28 | FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_ad09c5871239e0e7fe2bcc08256b8840 | p1@Siglec15 |
| 3.45e-28 | FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_ad09c5871239e0e7fe2bcc08256b8840 | p1@Siglec15 |
| 6.5e-28 | FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_befa630eb0d4aece0c79ea02252f01bf | p6@Atp2a1 |
| 6.5e-28 | FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_befa630eb0d4aece0c79ea02252f01bf | p6@Atp2a1 |
| 8.9e-28 | FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_4c4377fbb8711044673bdca17ccf88f0 | p7@Atp2a1 |
| 8.9e-28 | FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_4c4377fbb8711044673bdca17ccf88f0 | p7@Atp2a1 |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_c4ceb1c3ba3d2ab9b649c2d055e42abc | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_c4ceb1c3ba3d2ab9b649c2d055e42abc | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_c4ceb1c3ba3d2ab9b649c2d055e42abc | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_c4ceb1c3ba3d2ab9b649c2d055e42abc | p@chr7:133600635..133600663, + |
| 6.75e-27 | FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_3222ea71e07021a26c72e5c16443b857 | p4@Sgca |
| 6.75e-27 | FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_3222ea71e07021a26c72e5c16443b857 | p4@Sgca |
| 1.66e-26 | FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_6c5543f40c681d753afb33157a31d76c | p1@Mepe |
| 1.66e-26 | FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_6c5543f40c681d753afb33157a31d76c | p1@Mepe |
| 3.47e-26 | FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_f6f48129cea67f9af682a8bc2ccba440 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_f6f48129cea67f9af682a8bc2ccba440 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_f6f48129cea67f9af682a8bc2ccba440 | p2@Tm4sf19 |
| 3.47e-26 | FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_f6f48129cea67f9af682a8bc2ccba440 | p2@Tm4sf19 |
| 1.12e-25 | FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_96d7ad081ddfd52cedcc3cc053c97ba1 | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_96d7ad081ddfd52cedcc3cc053c97ba1 | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_96d7ad081ddfd52cedcc3cc053c97ba1 | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_96d7ad081ddfd52cedcc3cc053c97ba1 | p@chr15:97806574..97806585, - |
| 1.36e-25 | FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_ae195cad09b7d5d4caea4610e2d6acbb | p@chr2:180890942..180890956, - |
| 1.36e-25 | FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_ae195cad09b7d5d4caea4610e2d6acbb | p2@Siglec15 |
