FFCP PHASE1:Mm9::chr4:42930106..42930205,+: Difference between revisions
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{{FFCP|EntrezGene=230085|HGNC=|MCL_coexpression_id=1|UniProt=Q80TL4,A2AG27|association_with_transcript=0bp_to_ENSMUST00000069184,ENSMUST00000107976,ENSMUST00000124380,NM_172690,uc008soj.1,uc008sok.1_5end|description=CAGE_peak_1_at_N28178_5end|id=chr4:42930106..42930205,+|ontology_enrichment_celltype=CL:0000117!2.35e-13!23;CL:0000337!2.35e-13!23;CL:0000540!7.11e-10!33;CL:0000047!7.11e-10!33;CL:0000031!7.11e-10!33;CL:0000404!7.11e-10!33|ontology_enrichment_celltype_v019_2=CL:0000117,6.36e-15,23;CL:0000337,6.36e-15,23;CL:0000540,2.58e-10,33;CL:0000047,2.58e-10,33;CL:0000031,2.58e-10,33;CL:0000404,2.58e-10,33;CL:0000393,5.85e-07,39;CL:0000211,5.85e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!3.50e-19!52;UBERON:0005068!3.50e-19!52;UBERON:0006241!3.50e-19!52;UBERON:0007135!3.50e-19!52;UBERON:0002346!1.18e-18!71;UBERON:0003075!1.18e-18!71;UBERON:0007284!1.18e-18!71;UBERON:0004121!1.53e-18!102;UBERON:0000924!1.53e-18!102;UBERON:0006601!1.53e-18!102;UBERON:0001017!1.77e-18!73;UBERON:0005743!1.77e-18!73;UBERON:0000073!2.20e-18!75;UBERON:0001016!2.20e-18!75;UBERON:0002020!5.19e-18!34;UBERON:0000955!5.72e-18!50;UBERON:0006238!5.72e-18!50;UBERON:0000033!8.13e-18!63;UBERON:0002616!1.99e-17!49;UBERON:0003056!4.70e-15!49;UBERON:0002791!4.80e-15!29;UBERON:0003528!4.80e-15!29;UBERON:0001893!4.80e-15!29;UBERON:0003080!1.70e-14!40;UBERON:0002780!6.59e-14!39;UBERON:0001890!6.59e-14!39;UBERON:0006240!6.59e-14!39;UBERON:0000956!1.35e-10!21;UBERON:0001869!1.35e-10!21;UBERON:0000203!1.35e-10!21;UBERON:0000468!3.80e-09!333;UBERON:0002619!1.27e-08!17;UBERON:0002021!2.26e-08!10;UBERON:0000411!2.26e-08!10;UBERON:0001950!2.26e-08!10;UBERON:0007811!2.32e-08!86;UBERON:0000153!3.87e-08!94|ontology_enrichment_uberon_v019_2=UBERON:0000073,7.73e-21,54;UBERON:0002020,2.65e-20,34;UBERON:0001049,1.86e-19,52;UBERON:0005068,1.86e-19,52;UBERON:0006241,1.86e-19,52;UBERON:0007135,1.86e-19,52;UBERON:0010314,6.80e-19,92;UBERON:0002346,1.33e-18,64;UBERON:0003075,1.33e-18,64;UBERON:0007284,1.33e-18,64;UBERON:0010371,4.67e-18,73;UBERON:0001017,5.67e-18,73;UBERON:0004121,1.39e-17,95;UBERON:0000924,1.39e-17,95;UBERON:0006601,1.39e-17,95;UBERON:0001016,1.93e-17,75;UBERON:0003528,6.13e-17,29;UBERON:0002791,6.13e-17,29;UBERON:0001893,6.13e-17,29;UBERON:0000955,4.07e-16,47;UBERON:0006238,4.07e-16,47;UBERON:0002616,1.54e-15,46;UBERON:0003056,2.59e-15,49;UBERON:0003080,6.66e-15,40;UBERON:0002780,2.98e-14,39;UBERON:0001890,2.98e-14,39;UBERON:0006240,2.98e-14,39;UBERON:0000956,6.84e-12,21;UBERON:0001869,6.84e-12,21;UBERON:0000203,6.84e-12,21;UBERON:0002619,1.17e-09,17;UBERON:0002021,2.81e-09,10;UBERON:0000411,2.81e-09,10;UBERON:0001950,2.81e-09,10|phase1_expression=1.12104192973356,0.348975407639361,0,0,0,0,0,0,0.140788722151667,0,0,0,0,0,0,0.202475267389826,0,0.157731082679119,0,0,12.161190491603,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.218025156380447,0.219686182734472,0,0.139986421625363,0,0,0,0,0,0,0,37.6308617198852,32.797440714866,47.5373552629634,0,0,0,0,0,0.299600110518405,0.384218305321555,13.894408049336,17.8207838597832,14.9330722559481,55.7019419587417,50.3580273369679,22.7832886539815,21.3735400370667,39.5264078242309,52.8556228797066,63.8436690425939,53.1478605066602,27.5642341356105,28.7271200911566,32.8175423450759,61.6994427793052,40.518907922281,45.075483094159,57.4525741673652,48.6911148332932,44.9222664438974,0.984440513331393,1.81371744256285,0,0,0,0,0.649776417447669,0.448026887097336,2.80888840263504,0,0,0,1.97180787687353,0,0,0,0,0,0,1.37020655662872,1.55362730188303,2.52351636410202,0.693941307064543,1.52232739156071,1.84492397804847,1.50722640552623,2.93971767839262,0.251333182659351,0.494389935468748,0.578397427679647,0,0.323533699894818,0,0,0,9.07620470735796,8.16842156572475,0.766371165625774,0,0,0,55.8719084979989,82.8076091101714,57.1727302113533,92.9960113028679,95.126150126883,58.3884405212364,71.3861557498134,1.2220723662038,0.124406970610093,0,1.26265113531884,0.390361328888111,2.06911893990126,2.16074555766419,5.27466862425003,5.44291993210623,5.38077625196369,4.31027932974753,5.17406741478031,0,0.567318240503458,1.05570674498369,1.09597866213787,0.278047249225598,6.96504333044333,4.93877127379064,1.59227413454795,0,0,0,1.03562886267751,3.51789089971644,2.34080679899319,3.78791576936336,3.14822770795846,4.16521204795921,4.88321283975857,5.633741429392,4.55384835231961,6.91151369636618,2.95501435342371,2.67527071501324,3.50879969820798,2.19550115291051,1.61047702512446,59.0914755465198,27.8871499547861,0,0.528901133327089,1.91959425481711,1.39342003116263,1.67527699718721,1.4117846723634,0.444756087689741,1.52180500890047,0.474529061544512,0.988193728344065,1.00534083520108,2.98434708061726,1.75467678407208,1.79763881730844,1.51296634912286,0.597423819763102,0.758671603812327,0.228497025219458,2.25415471346161,1.62921062276251,1.16371492300575,0.771494018793504,0.189709611372772,0.147610147979602,0,0,0,0.333690211432188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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:230085 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q80TL4,uniprot:A2AG27 | |||
|association_with_transcript=0bp_to_ENSMUST00000069184,ENSMUST00000107976,ENSMUST00000124380,NM_172690,uc008soj.1,uc008sok.1_5end | |||
|cluster_id=chr4:42930106..42930205,+ | |||
|description=CAGE_peak_1_at_N28178_5end | |||
|id=chr4:42930106..42930205,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.35e-13!23;CL:0000337!2.35e-13!23;CL:0000540!7.11e-10!33;CL:0000047!7.11e-10!33;CL:0000031!7.11e-10!33;CL:0000404!7.11e-10!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.36e-15,23;CL:0000337,6.36e-15,23;CL:0000540,2.58e-10,33;CL:0000047,2.58e-10,33;CL:0000031,2.58e-10,33;CL:0000404,2.58e-10,33;CL:0000393,5.85e-07,39;CL:0000211,5.85e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.50e-19!52;UBERON:0005068!3.50e-19!52;UBERON:0006241!3.50e-19!52;UBERON:0007135!3.50e-19!52;UBERON:0002346!1.18e-18!71;UBERON:0003075!1.18e-18!71;UBERON:0007284!1.18e-18!71;UBERON:0004121!1.53e-18!102;UBERON:0000924!1.53e-18!102;UBERON:0006601!1.53e-18!102;UBERON:0001017!1.77e-18!73;UBERON:0005743!1.77e-18!73;UBERON:0000073!2.20e-18!75;UBERON:0001016!2.20e-18!75;UBERON:0002020!5.19e-18!34;UBERON:0000955!5.72e-18!50;UBERON:0006238!5.72e-18!50;UBERON:0000033!8.13e-18!63;UBERON:0002616!1.99e-17!49;UBERON:0003056!4.70e-15!49;UBERON:0002791!4.80e-15!29;UBERON:0003528!4.80e-15!29;UBERON:0001893!4.80e-15!29;UBERON:0003080!1.70e-14!40;UBERON:0002780!6.59e-14!39;UBERON:0001890!6.59e-14!39;UBERON:0006240!6.59e-14!39;UBERON:0000956!1.35e-10!21;UBERON:0001869!1.35e-10!21;UBERON:0000203!1.35e-10!21;UBERON:0000468!3.80e-09!333;UBERON:0002619!1.27e-08!17;UBERON:0002021!2.26e-08!10;UBERON:0000411!2.26e-08!10;UBERON:0001950!2.26e-08!10;UBERON:0007811!2.32e-08!86;UBERON:0000153!3.87e-08!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,7.73e-21,54;UBERON:0002020,2.65e-20,34;UBERON:0001049,1.86e-19,52;UBERON:0005068,1.86e-19,52;UBERON:0006241,1.86e-19,52;UBERON:0007135,1.86e-19,52;UBERON:0010314,6.80e-19,92;UBERON:0002346,1.33e-18,64;UBERON:0003075,1.33e-18,64;UBERON:0007284,1.33e-18,64;UBERON:0010371,4.67e-18,73;UBERON:0001017,5.67e-18,73;UBERON:0004121,1.39e-17,95;UBERON:0000924,1.39e-17,95;UBERON:0006601,1.39e-17,95;UBERON:0001016,1.93e-17,75;UBERON:0003528,6.13e-17,29;UBERON:0002791,6.13e-17,29;UBERON:0001893,6.13e-17,29;UBERON:0000955,4.07e-16,47;UBERON:0006238,4.07e-16,47;UBERON:0002616,1.54e-15,46;UBERON:0003056,2.59e-15,49;UBERON:0003080,6.66e-15,40;UBERON:0002780,2.98e-14,39;UBERON:0001890,2.98e-14,39;UBERON:0006240,2.98e-14,39;UBERON:0000956,6.84e-12,21;UBERON:0001869,6.84e-12,21;UBERON:0000203,6.84e-12,21;UBERON:0002619,1.17e-09,17;UBERON:0002021,2.81e-09,10;UBERON:0000411,2.81e-09,10;UBERON:0001950,2.81e-09,10 | |||
|phase1_expression=1.12104192973356,0.348975407639361,0,0,0,0,0,0,0.140788722151667,0,0,0,0,0,0,0.202475267389826,0,0.157731082679119,0,0,12.161190491603,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.218025156380447,0.219686182734472,0,0.139986421625363,0,0,0,0,0,0,0,37.6308617198852,32.797440714866,47.5373552629634,0,0,0,0,0,0.299600110518405,0.384218305321555,13.894408049336,17.8207838597832,14.9330722559481,55.7019419587417,50.3580273369679,22.7832886539815,21.3735400370667,39.5264078242309,52.8556228797066,63.8436690425939,53.1478605066602,27.5642341356105,28.7271200911566,32.8175423450759,61.6994427793052,40.518907922281,45.075483094159,57.4525741673652,48.6911148332932,44.9222664438974,0.984440513331393,1.81371744256285,0,0,0,0,0.649776417447669,0.448026887097336,2.80888840263504,0,0,0,1.97180787687353,0,0,0,0,0,0,1.37020655662872,1.55362730188303,2.52351636410202,0.693941307064543,1.52232739156071,1.84492397804847,1.50722640552623,2.93971767839262,0.251333182659351,0.494389935468748,0.578397427679647,0,0.323533699894818,0,0,0,9.07620470735796,8.16842156572475,0.766371165625774,0,0,0,55.8719084979989,82.8076091101714,57.1727302113533,92.9960113028679,95.126150126883,58.3884405212364,71.3861557498134,1.2220723662038,0.124406970610093,0,1.26265113531884,0.390361328888111,2.06911893990126,2.16074555766419,5.27466862425003,5.44291993210623,5.38077625196369,4.31027932974753,5.17406741478031,0,0.567318240503458,1.05570674498369,1.09597866213787,0.278047249225598,6.96504333044333,4.93877127379064,1.59227413454795,0,0,0,1.03562886267751,3.51789089971644,2.34080679899319,3.78791576936336,3.14822770795846,4.16521204795921,4.88321283975857,5.633741429392,4.55384835231961,6.91151369636618,2.95501435342371,2.67527071501324,3.50879969820798,2.19550115291051,1.61047702512446,59.0914755465198,27.8871499547861,0,0.528901133327089,1.91959425481711,1.39342003116263,1.67527699718721,1.4117846723634,0.444756087689741,1.52180500890047,0.474529061544512,0.988193728344065,1.00534083520108,2.98434708061726,1.75467678407208,1.79763881730844,1.51296634912286,0.597423819763102,0.758671603812327,0.228497025219458,2.25415471346161,1.62921062276251,1.16371492300575,0.771494018793504,0.189709611372772,0.147610147979602,0,0,0,0.333690211432188,0.589676985339609,0.674586337154561,0.405720242777006,0,0,0,0,0,0,0,0.312037673114561,0,0,0,7.944387177164,1.13694847062291,0.325929952884052,0.169745085775188,0.234690248288502,0.335012514883631,0.714130922658041,0.780534591431195,0.788175720530955,0.664394068946325,0.478364305972461,2.94953966488328,5.18054945597687,8.53429445630918,0,0,0,0.275936746304732,50.0917840761911,48.8772733089487,0,0,0.631016438832513,0.390438744296638,1.93881057959519,0,1.33679204449436,0.283076530788832,1.61924280669958,1.46127928955656,1.18586333383957,36.3093087556642,1.41940085208269,3.02711526234334,0.651547837414304,3.13443233647817,0,0.971122544619926,0,1.13163047853539,0.295301892880773,0.614870295887855,0.516856586336442,0.363533729477506,0.712994756769443,1.26414703174326,0,1.03135543248187,0,0.540183282093931,0.517434735131018,0.857348140126369,0.354680467284547,3.0322698992352,5.92376474167636,4.87143918583359,0,0,1.10264199027481,4.28704257647848,3.39075296061402,4.04096597018644,3.58117032009409,1.31312719796049,0.291480836629851,58.0381195292895,0.341741761595705,0.619160603889667,0.370389054739423,0.376736914009382,0,0,0,0,0,6.68269432610579,0.790839983952838,1.42323626988794,1.18805874903981,2.92723614420256,5.8957892211468,7.41753905116514,6.36431609085087,7.0674104335688,0.777689839750757,0,1.69107881605257,0,0.330916980914195,4.27792614356905,4.26227417476513,2.36538575687089,3.0512882047896,1.0416350787516,2.83120229949419,1.20792060413003,0.288030006257865,0.316011120628178,1.01362607645082,0.410843828659309,0.129920822977795,0.179026695667481,0,0.240390899039938,0.295379054349154,0.605798699688886,0.15241361331,0.201652370273681,0.38983152295901,0.384847366561318,0.350630706544707,3.62768613784338,0,0,0.167884616364078,2.70465431645067,0,0.73260649706906,0.214368379079066,0,150.788741978757,134.414969060096,140.359400792652,150.371534550727,130.850761276193,132.949325940587,134.329477546129,111.229337196382,135.942722695261,135.653201678977,0.518936737920883,2.79317411380722,3.92687293234509,5.10524105843418,5.8691685535835,7.72142735490059,6.00066165064361,8.85950746127245,9.30665707816264,6.31743029409494,9.12525479604863,7.1678009726709,6.83583004530142,7.93911889820379,7.75378830900779,6.19181798667996,8.22778714208474,7.33055037762079,6.59337441285291,5.5935589651071,5.82877729055206,3.72699192934609,5.24559617884106,6.54058874845478,7.0582035311498,6.59993941555077,10.0610385080025,5.78753365163254,7.4692262615224,6.17256498823512,8.42308628681636,8.76689893142515,8.18462086339379,6.04253680625267,7.52335782826451,17.7365510335942,9.35726433781634,7.30561583764214,6.12122662620299,4.41182838239031,1.62307484934295 | |||
|short_description=p1@N28178 | |||
}} |
Revision as of 11:20, 5 August 2015
Short description: | p1@N28178 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_N28178_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000069184, ENSMUST00000107976, ENSMUST00000124380, NM_172690, uc008soj.1, uc008sok.1_5end |
EntrezGene: | 230085 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.36e-15 | 23 |
neuroblast (sensu Vertebrata) | 6.36e-15 | 23 |
neuron | 2.58e-10 | 33 |
neuronal stem cell | 2.58e-10 | 33 |
neuroblast | 2.58e-10 | 33 |
electrically signaling cell | 2.58e-10 | 33 |
electrically responsive cell | 5.85e-07 | 39 |
electrically active cell | 5.85e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 7.73e-21 | 54 |
gray matter | 2.65e-20 | 34 |
neural tube | 1.86e-19 | 52 |
neural rod | 1.86e-19 | 52 |
future spinal cord | 1.86e-19 | 52 |
neural keel | 1.86e-19 | 52 |
structure with developmental contribution from neural crest | 6.80e-19 | 92 |
neurectoderm | 1.33e-18 | 64 |
neural plate | 1.33e-18 | 64 |
presumptive neural plate | 1.33e-18 | 64 |
ecto-epithelium | 4.67e-18 | 73 |
central nervous system | 5.67e-18 | 73 |
ectoderm-derived structure | 1.39e-17 | 95 |
ectoderm | 1.39e-17 | 95 |
presumptive ectoderm | 1.39e-17 | 95 |
nervous system | 1.93e-17 | 75 |
brain grey matter | 6.13e-17 | 29 |
regional part of telencephalon | 6.13e-17 | 29 |
telencephalon | 6.13e-17 | 29 |
brain | 4.07e-16 | 47 |
future brain | 4.07e-16 | 47 |
regional part of brain | 1.54e-15 | 46 |
pre-chordal neural plate | 2.59e-15 | 49 |
anterior neural tube | 6.66e-15 | 40 |
regional part of forebrain | 2.98e-14 | 39 |
forebrain | 2.98e-14 | 39 |
future forebrain | 2.98e-14 | 39 |
cerebral cortex | 6.84e-12 | 21 |
cerebral hemisphere | 6.84e-12 | 21 |
pallium | 6.84e-12 | 21 |
regional part of cerebral cortex | 1.17e-09 | 17 |
occipital lobe | 2.81e-09 | 10 |
visual cortex | 2.81e-09 | 10 |
neocortex | 2.81e-09 | 10 |