FFCP PHASE1:Hg19::chr12:20848257..20848271,+: Difference between revisions
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=53919 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=13819 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q5JPA4,B7Z3Q3,Q9NYB5,B7Z8P1 | ||
|association_with_transcript=-17bp_to_ENST00000534996,ENST00000545604,NM_001145945,NM_001145946,uc001rej.3,uc009zip.2,uc010sii.1,uc010sij.1_5end | |association_with_transcript=-17bp_to_ENST00000534996,ENST00000545604,NM_001145945,NM_001145946,uc001rej.3,uc009zip.2,uc010sii.1,uc010sij.1_5end | ||
|cluster_id=chr12:20848257..20848271,+ | |cluster_id=chr12:20848257..20848271,+ |
Latest revision as of 19:04, 17 September 2015
Short description: | p7@SLCO1C1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_SLCO1C1_5end |
Coexpression cluster: | C152_peripheral_neuroectodermal_neuroepithelioma_neuroblastoma_testicular_carcinoid_lung |
Association with transcript: | -17bp_to_ENST00000534996, ENST00000545604, NM_001145945, NM_001145946, uc001rej.3, uc009zip.2, uc010sii.1, uc010sij.1_5end |
EntrezGene: | SLCO1C1 |
HGNC: | 13819 |
UniProt: | Q5JPA4B7Z3Q3Q9NYB5B7Z8P1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p7@SLCO1C1 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
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medulla oblongata | 1.48e-33 | 3 |
myelencephalon | 1.48e-33 | 3 |
future myelencephalon | 1.48e-33 | 3 |
neurectoderm | 8.88e-20 | 86 |
regional part of nervous system | 4.11e-19 | 53 |
regional part of brain | 4.11e-19 | 53 |
neural tube | 4.86e-18 | 56 |
neural rod | 4.86e-18 | 56 |
future spinal cord | 4.86e-18 | 56 |
neural keel | 4.86e-18 | 56 |
Showing 1 to 10 of 53 entries