Template:F5samples: Difference between revisions
From FANTOM5_SSTAR
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{{#if: {{{expression_enrichment_score}}} | | |||
{{#enrichscoretable_hg19:{{{expression_enrichment_score}}}}} | |||
}} | |||
{{#if: {{{top_motifs}}} | | {{#if: {{{top_motifs}}} | |
Revision as of 15:20, 29 March 2012
{{{name}}}
Transcriptome | |
Genomic view | zenbu , UCSC |
---|---|
hCAGE | {{{profile_hcage}}} |
RNA-seq | {{{profile_rnaseq}}} |
smallRNA seq | {{{profile_srnaseq}}} |
nanoCAGEscan | {{{profile_cagescan}}} |
sample detail | |
species | {{{sample_species}}} |
strain | {{{sample_strain}}} |
tissue | {{{sample_tissue}}} |
dev_stage | {{{sample_dev_stage}}} |
sex | {{{sample_sex}}} |
age | {{{sample_age}}} |
ethnicity | {{{sample_ethnicity}}} |
cell_type | {{{sample_cell_type}}} |
cell_line | {{{sample_cell_line}}} |
collaboration | {{{sample_collaboration}}} |
Experimental condition | {{{sample_experimental_condition}}} |
disease | {{{sample_disease}}} |
cell_lot | {{{sample_cell_lot}}} |
cell_catalog | {{{sample_cell_catalog}}} |
company | {{{sample_company}}} |
donor(cell lot) | {{{sample_donor(cell lot)}}} |
Note | {{{sample_note}}} |
RNA info | |
sample_id | {{{sample_id}}} |
tube_id | {{{rna_tube_id}}} |
box | {{{rna_box}}} |
position | {{{rna_position}}} |
lot_number | {{{rna_lot_number}}} |
catalog_number | {{{rna_catalog_number}}} |
RIN | {{{rna_rin}}} |
OD260/230 | {{{rna_od260/230}}} |
OD260/280 | {{{rna_od260/280}}} |
sample_type | {{{rna_sample_type}}} |
extraction_protocol | {{{rna_extraction_protocol}}} |
weight_ug | {{{rna_weight_ug}}} |
concentration | {{{rna_concentration}}} |
{{#enrichscoretable_hg19:{{{expression_enrichment_score}}}}}
Top activities with MARA |
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{{#top_motifs_table01: {{{top_motifs}}}}} |
Facet (from FONSE)
Cell_lineage
CL:
Disease
DOID:
Anatomy
UBERON: