Personal tools

MacroAPE 1083:TTGGCTCGGC,motif500

From FANTOM5_SSTAR

Revision as of 12:16, 7 September 2012 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Full Name: TTGGCTCGGC,motif500,CNhs11766,T:1211.0(28.66%),B:15218.3(20.93%),P:1e-32

Motif matrix
POACGT
176.293124.73367.816942.158
296.8896.8836.33980.91
349.651100.513977.27783.559
483.55985.981978.48862.972
523.0091049.93760.5577.504
652.07387.19272.66999.075
787.192880.397144.10999.302
8104.14696.88943.36966.605
932.69788.4031022.08467.816
1085.981919.149155.00850.862

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

HAP3#MA0314.150.001599990.7615950.73837110TTGGCTCGGCTCTGATTGGTTCAGA+
TLX1::NFIC#MA0119.100.001930890.9191030.73837110TTGGCTCGGCTTGGCATGGTGCCA-
MAC1#MA0326.100.002607531.241180.7383718TTGGCTCGGCTTTGCTCA+
NFIC#MA0161.100.004216592.00710.7383716TTGGCTCGGCTTGGCA+
BAS1#MA0278.150.004715712.244680.73837110TTGGCTCGGCTTGACTTGACTCTGGCTGTGC-
CRZ1#MA0285.100.005328832.536530.7383719TTGGCTCGGCGTGGCTTAG-
IME1#MA0320.1-40.005430572.584950.7383716TTGGCTCGGCCTCGGCGG-
HAP2#MA0313.100.00638833.040830.7600165TTGGCTCGGCTTGGT+
NFYA#MA0060.170.007277263.463980.7695789TTGGCTCGGCGCGCTGATTGGCTGAG-
Zfx#MA0146.110.01282776.1060.99974710TTGGCTCGGCGGGGCCGAGGCCTG+
NFE2L2#MA0150.100.01324436.304280.99974710TTGGCTCGGCATGACTCAGCA+
YDR026C#MA0421.100.01616887.696350.99974710TTGGCTCGGCTTTACCCGGC+
OPI1#MA0349.1-10.01848248.79760.9997477TTGGCTCGGCCGGTTCG-
E2F1#MA0024.110.0189829.035450.9997477TTGGCTCGGCTTTGGCGC+
ARO80#MA0273.130.01911439.098390.99974710TTGGCTCGGCGATAATTCTCGGCAAGTATGT+