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MCL coexpression mm9:1499

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:128002960..128003055,-p1@Pa2g4
Mm9::chr12:29320756..29320770,-p4@Rps7
Mm9::chr1:144991185..144991219,-p@chr1:144991185..144991219
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Mm9::chr3:129534041..129534104,-p1@Gar1
Mm9::chr6:67216981..67217015,+p1@Serbp1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0003723RNA binding5.96824109179168e-05
GO:0042254ribosome biogenesis and assembly5.96824109179168e-05
GO:0022613ribonucleoprotein complex biogenesis and assembly0.000141697525165298
GO:0016072rRNA metabolic process0.000911051986071722
GO:0006364rRNA processing0.000911051986071722
GO:0030529ribonucleoprotein complex0.000911051986071722
GO:0001651dense fibrillar component0.003067988823755
GO:0030515snoRNA binding0.0053356630978383
GO:0003676nucleic acid binding0.0053356630978383
GO:0006996organelle organization and biogenesis0.00814978272683597
GO:0004239methionyl aminopeptidase activity0.00975857397116205
GO:0006396RNA processing0.0172167034609127
GO:0050897cobalt ion binding0.0181570045119305
GO:0005843cytosolic small ribosomal subunit (sensu Eukaryota)0.0201105226744863
GO:0006412translation0.0201105226744863
GO:0005732small nucleolar ribonucleoprotein complex0.0201105226744863
GO:0032991macromolecular complex0.0263349046740459
GO:0019843rRNA binding0.0273918789093124
GO:0015935small ribosomal subunit0.0338286166136434
GO:0009059macromolecule biosynthetic process0.0343384152329058
GO:0016043cellular component organization and biogenesis0.0343384152329058
GO:0044452nucleolar part0.0344461389135031
GO:0004177aminopeptidase activity0.0344461389135031
GO:0005830cytosolic ribosome (sensu Eukaryota)0.0427862167485571
GO:0010467gene expression0.042860735323676
GO:0044249cellular biosynthetic process0.043553479040313
GO:0008235metalloexopeptidase activity0.043553479040313
GO:0033279ribosomal subunit0.0473159543949282



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br><br><br>



TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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