Personal tools

MCL coexpression mm9:61

From FANTOM5_SSTAR

Revision as of 11:06, 23 January 2013 by Autoedit (talk | contribs)
Jump to: navigation, search


Phase1 CAGE Peaks

 Short description
Mm9::chr10:51914781..51914796,-p3@Ros1
Mm9::chr10:51914832..51914889,-p1@Ros1
Mm9::chr10:74593726..74593746,+p@chr10:74593726..74593746
+
Mm9::chr10:77076476..77076515,+p4@Sumo3
Mm9::chr10:79882428..79882445,-p@chr10:79882428..79882445
-
Mm9::chr10:87966904..87966912,-p5@Chpt1
Mm9::chr11:109405008..109405050,+p3@Arsg
Mm9::chr11:115867837..115867856,+p@chr11:115867837..115867856
+
Mm9::chr11:115867863..115867878,+p@chr11:115867863..115867878
+
Mm9::chr11:44074007..44074026,-p@chr11:44074007..44074026
-
Mm9::chr11:45669742..45669754,+p@chr11:45669742..45669754
+
Mm9::chr11:57522478..57522499,+p@chr11:57522478..57522499
+
Mm9::chr11:5929219..5929252,-p@chr11:5929219..5929252
-
Mm9::chr11:60755160..60755171,+p3@Map2k3
Mm9::chr11:64845904..64845915,-p@chr11:64845904..64845915
-
Mm9::chr11:64845934..64845949,-p@chr11:64845934..64845949
-
Mm9::chr11:72315911..72315929,-p3@Spns3
Mm9::chr11:72315938..72315953,-p2@Spns3
Mm9::chr12:103661951..103661984,-p2@Lgmn
Mm9::chr12:105101472..105101509,-p@chr12:105101472..105101509
-
Mm9::chr12:105194779..105194802,-p@chr12:105194779..105194802
-
Mm9::chr12:112661459..112661475,+p@chr12:112661459..112661475
+
Mm9::chr12:113909391..113909409,-p@chr12:113909391..113909409
-
Mm9::chr12:83498365..83498376,+p@chr12:83498365..83498376
+
Mm9::chr12:85394389..85394400,+p@chr12:85394389..85394400
+
Mm9::chr13:4233032..4233043,+p@chr13:4233032..4233043
+
Mm9::chr13:73764613..73764631,+p2@Tert
Mm9::chr13:73764633..73764645,+p4@Tert
Mm9::chr13:73837397..73837411,+p1@5430425J12Rik
Mm9::chr14:20931791..20931792,-p@chr14:20931791..20931792
-
Mm9::chr14:20957731..20957741,-p@chr14:20957731..20957741
-
Mm9::chr14:20957769..20957788,-p@chr14:20957769..20957788
-
Mm9::chr14:54778131..54778142,+p1@ENSMUST00000103688
Mm9::chr15:100233689..100233701,-p7@Slc11a2
Mm9::chr15:100233765..100233775,-p8@Slc11a2
Mm9::chr15:100233813..100233831,-p4@Slc11a2
Mm9::chr15:100233839..100233859,-p3@Slc11a2
Mm9::chr15:12349300..12349346,-p@chr15:12349300..12349346
-
Mm9::chr15:12349347..12349358,-p@chr15:12349347..12349358
-
Mm9::chr15:12349385..12349398,-p@chr15:12349385..12349398
-
Mm9::chr15:66946738..66946755,-p@chr15:66946738..66946755
-
Mm9::chr15:76445471..76445485,-p@chr15:76445471..76445485
-
Mm9::chr15:76446342..76446390,-p@chr15:76446342..76446390
-
Mm9::chr15:82167439..82167450,-p@chr15:82167439..82167450
-
Mm9::chr15:82169200..82169221,-p1@Naga
Mm9::chr15:82169231..82169284,-p2@Naga
Mm9::chr16:16367340..16367364,-p@chr16:16367340..16367364
-
Mm9::chr16:17097078..17097095,-p3@Ppil2
Mm9::chr16:17509251..17509266,+p4@Lztr1
Mm9::chr16:17509308..17509333,+p2@Lztr1
Mm9::chr16:17511153..17511183,+p7@Lztr1
Mm9::chr16:31878954..31878969,+p1@Mfi2
Mm9::chr16:31897933..31897978,+p@chr16:31897933..31897978
+
Mm9::chr16:32487238..32487247,-p@chr16:32487238..32487247
-
Mm9::chr16:32487254..32487277,-p@chr16:32487254..32487277
-
Mm9::chr16:32487281..32487305,-p@chr16:32487281..32487305
-
Mm9::chr16:32487311..32487376,-p@chr16:32487311..32487376
-
Mm9::chr16:32487959..32487981,-p3@Osta
Mm9::chr16:32487983..32488004,-p4@Osta
Mm9::chr16:32488179..32488217,+p@chr16:32488179..32488217
+
Mm9::chr16:90997347..90997353,+p@chr16:90997347..90997353
+
Mm9::chr17:35068293..35068329,+p1@Neu1
Mm9::chr17:35141626..35141635,+p15@Vars
Mm9::chr17:35141640..35141673,+p9@Vars
Mm9::chr17:56427286..56427289,-p@chr17:56427286..56427289
-
Mm9::chr17:73492035..73492049,+p@chr17:73492035..73492049
+
Mm9::chr18:42739415..42739444,-p1@Gpr151
Mm9::chr18:42739447..42739459,-p2@Gpr151
Mm9::chr18:61287405..61287471,+p@chr18:61287405..61287471
+
Mm9::chr18:73338986..73338988,-p@chr18:73338986..73338988
-
Mm9::chr18:73411461..73411468,-p@chr18:73411461..73411468
-
Mm9::chr19:10557159..10557198,-p@chr19:10557159..10557198
-
Mm9::chr19:34766031..34766055,-p@chr19:34766031..34766055
-
Mm9::chr19:40662828..40662861,-p2@Aldh18a1
Mm9::chr19:40662943..40662954,-p5@Aldh18a1
Mm9::chr19:40662960..40662961,-p6@Aldh18a1
Mm9::chr19:47530107..47530145,+p@chr19:47530107..47530145
+
Mm9::chr1:155396827..155396854,-p1@Npl
Mm9::chr1:187275480..187275499,-p@chr1:187275480..187275499
-
Mm9::chr1:187275501..187275535,-p@chr1:187275501..187275535
-
Mm9::chr1:34181464..34181475,+p@chr1:34181464..34181475
+
Mm9::chr1:84337652..84337672,-p6@Pid1
Mm9::chr1:95590297..95590312,+p@chr1:95590297..95590312
+
Mm9::chr1:9778477..9778488,+p@chr1:9778477..9778488
+
Mm9::chr1:9778490..9778501,+p@chr1:9778490..9778501
+
Mm9::chr2:119872822..119872824,-p@chr2:119872822..119872824
-
Mm9::chr2:128646434..128646454,+p@chr2:128646434..128646454
+
Mm9::chr2:130989850..130989862,-p@chr2:130989850..130989862
-
Mm9::chr2:130989879..130989888,-p@chr2:130989879..130989888
-
Mm9::chr2:130989890..130989906,-p@chr2:130989890..130989906
-
Mm9::chr2:144290130..144290169,+p1@ENSMUST00000149523
Mm9::chr2:153067233..153067236,-p4@Plagl2
Mm9::chr2:153067343..153067354,+p3@Pofut1
Mm9::chr2:165710566..165710571,-p13@Zmynd8
Mm9::chr2:180067095..180067107,+p1@ENSMUST00000069943
Mm9::chr2:181385166..181385171,+p@chr2:181385166..181385171
+
Mm9::chr2:25097099..25097116,+p@chr2:25097099..25097116
+
Mm9::chr2:25228753..25228761,+p@chr2:25228753..25228761
+
Mm9::chr2:25228775..25228786,+p@chr2:25228775..25228786
+
Mm9::chr2:25426821..25426841,-p1@Mamdc4
Mm9::chr2:25430095..25430152,-p@chr2:25430095..25430152
-
Mm9::chr2:72651722..72651742,-p1@ENSMUST00000136807
Mm9::chr3:107021927..107021974,-p@chr3:107021927..107021974
-
Mm9::chr3:135489192..135489207,+p7@Slc39a8
Mm9::chr3:135489215..135489234,+p6@Slc39a8
Mm9::chr3:135489239..135489293,+p4@Slc39a8
Mm9::chr3:145780415..145780426,+p5@Mcoln3
Mm9::chr3:145780432..145780485,+p1@Mcoln3
Mm9::chr3:145780491..145780504,+p4@Mcoln3
Mm9::chr3:145780505..145780508,+p6@Mcoln3
Mm9::chr3:145780665..145780682,+p@chr3:145780665..145780682
+
Mm9::chr3:145783719..145783725,+p@chr3:145783719..145783725
+
Mm9::chr3:79646779..79646854,-p1@Tmem144
Mm9::chr3:79681183..79681205,+p@chr3:79681183..79681205
+
Mm9::chr3:79681206..79681228,+p@chr3:79681206..79681228
+
Mm9::chr3:89170199..89170214,+p@chr3:89170199..89170214
+
Mm9::chr4:104446612..104446620,+p@chr4:104446612..104446620
+
Mm9::chr4:104448462..104448483,+p@chr4:104448462..104448483
+
Mm9::chr4:106295133..106295147,+p3@Ttc22
Mm9::chr4:106675198..106675233,+p@chr4:106675198..106675233
+
Mm9::chr4:115721260..115721290,-p5@Nsun4
Mm9::chr4:117807278..117807292,-p3@St3gal3
Mm9::chr4:118929758..118929778,-p1@ENSMUST00000150252
Mm9::chr4:118930017..118930033,+p@chr4:118930017..118930033
+
Mm9::chr4:122638692..122638696,-p2@Mfsd2a
Mm9::chr4:128784013..128784023,+p6@Tmem54
Mm9::chr4:128784034..128784047,+p4@Tmem54
Mm9::chr4:128785016..128785038,+p@chr4:128785016..128785038
+
Mm9::chr4:131228048..131228061,-p1@ENSMUST00000144212
Mm9::chr4:131859246..131859265,-p1@Rab42-ps
Mm9::chr4:135476646..135476716,+p1@Fuca1
Mm9::chr4:135485669..135485692,+p2@Fuca1
Mm9::chr4:135485712..135485725,+p3@Fuca1
Mm9::chr4:136243905..136243914,-p@chr4:136243905..136243914
-
Mm9::chr4:136243923..136243934,-p@chr4:136243923..136243934
-
Mm9::chr4:136243951..136243958,-p@chr4:136243951..136243958
-
Mm9::chr4:136358059..136358074,+p@chr4:136358059..136358074
+
Mm9::chr4:141604446..141604455,-p2@ENSMUST00000128385
Mm9::chr4:141604484..141604499,-p1@ENSMUST00000128385
Mm9::chr4:144376454..144376469,-p1@Gm438
Mm9::chr4:45861547..45861568,+p3@1300002K09Rik
Mm9::chr5:109189074..109189088,-p@chr5:109189074..109189088
-
Mm9::chr5:138369898..138369912,+p@chr5:138369898..138369912
+
Mm9::chr5:139828561..139828577,+p1@Cyp2w1
Mm9::chr5:139830195..139830214,+p@chr5:139830195..139830214
+
Mm9::chr5:140836332..140836382,-p2@Snx8
Mm9::chr5:148706353..148706362,-p3@Slc46a3
Mm9::chr5:148706363..148706374,-p2@Slc46a3
Mm9::chr5:148706380..148706406,-p1@Slc46a3
Mm9::chr5:148713734..148713744,-p@chr5:148713734..148713744
-
Mm9::chr5:31340635..31340649,-p7@Slc5a6
Mm9::chr5:36082674..36082705,-p3@Sh3tc1
Mm9::chr5:53385666..53385683,-p1@uc008xky.1
Mm9::chr5:64655448..64655459,+p@chr5:64655448..64655459
+
Mm9::chr5:64655464..64655493,+p@chr5:64655464..64655493
+
Mm9::chr5:64655555..64655609,+p@chr5:64655555..64655609
+
Mm9::chr5:64655612..64655621,+p@chr5:64655612..64655621
+
Mm9::chr5:66154757..66154780,+p4@N4bp2
Mm9::chr6:125292780..125292791,+p@chr6:125292780..125292791
+
Mm9::chr6:125292797..125292837,+p@chr6:125292797..125292837
+
Mm9::chr6:16805948..16806002,-p@chr6:16805948..16806002
-
Mm9::chr6:24813870..24813919,+p@chr6:24813870..24813919
+
Mm9::chr6:24813923..24813928,+p@chr6:24813923..24813928
+
Mm9::chr6:41591717..41591732,+p@chr6:41591717..41591732
+
Mm9::chr6:41591734..41591752,+p@chr6:41591734..41591752
+
Mm9::chr6:48361586..48361598,+p@chr6:48361586..48361598
+
Mm9::chr6:48361612..48361623,+p@chr6:48361612..48361623
+
Mm9::chr6:48362155..48362169,+p@chr6:48362155..48362169
+
Mm9::chr6:48363021..48363033,+p9@Krba1
Mm9::chr6:48824180..48824191,+p@chr6:48824180..48824191
+
Mm9::chr6:54423148..54423168,-p@chr6:54423148..54423168
-
Mm9::chr7:109019171..109019190,-p7@Folr1
Mm9::chr7:109019201..109019221,-p12@Folr1
Mm9::chr7:109019225..109019270,-p1@Folr1
Mm9::chr7:139761841..139761857,-p@chr7:139761841..139761857
-
Mm9::chr7:139761873..139761915,-p@chr7:139761873..139761915
-
Mm9::chr7:149846769..149846770,-p@chr7:149846769..149846770
-
Mm9::chr7:17006302..17006345,+p@chr7:17006302..17006345
+
Mm9::chr7:30290747..30290767,-p14@Sipa1l3
Mm9::chr7:30290773..30290784,-p19@Sipa1l3
Mm9::chr7:30290794..30290809,-p9@Sipa1l3
Mm9::chr7:31445255..31445267,-p@chr7:31445255..31445267
-
Mm9::chr7:31445269..31445282,-p@chr7:31445269..31445282
-
Mm9::chr7:38016087..38016099,-p@chr7:38016087..38016099
-
Mm9::chr7:52356502..52356506,-p@chr7:52356502..52356506
-
Mm9::chr7:52358540..52358559,-p@chr7:52358540..52358559
-
Mm9::chr7:52358569..52358598,-p@chr7:52358569..52358598
-
Mm9::chr7:52359096..52359103,-p2@Fcgrt
Mm9::chr7:52359117..52359170,-p1@Fcgrt
Mm9::chr7:52359342..52359362,-p3@Fcgrt
Mm9::chr7:94452759..94452773,+p@chr7:94452759..94452773
+
Mm9::chr7:94452779..94452797,+p@chr7:94452779..94452797
+
Mm9::chr7:94452798..94452815,+p@chr7:94452798..94452815
+
Mm9::chr8:13974676..13974698,-p1@2610019F03Rik
Mm9::chr8:13974715..13974737,-p2@2610019F03Rik
Mm9::chr8:23506704..23506720,-p@chr8:23506704..23506720
-
Mm9::chr8:35112002..35112009,-p@chr8:35112002..35112009
-
Mm9::chr8:35118952..35118963,-p@chr8:35118952..35118963
-
Mm9::chr8:37281719..37281751,-p@chr8:37281719..37281751
-
Mm9::chr8:41718934..41718964,+p@chr8:41718934..41718964
+
Mm9::chr8:72712757..72712785,-p@chr8:72712757..72712785
-
Mm9::chr8:87860297..87860341,-p@chr8:87860297..87860341
-
Mm9::chr9:107558952..107558970,-p@chr9:107558952..107558970
-
Mm9::chr9:107559006..107559023,-p@chr9:107559006..107559023
-
Mm9::chr9:114310257..114310273,+p1@Glb1
Mm9::chr9:59796270..59796294,-p4@Nr2e3
Mm9::chr9:59796330..59796350,-p6@Nr2e3
Mm9::chr9:59796372..59796383,-p8@Nr2e3
Mm9::chr9:59797088..59797101,-p9@Nr2e3
Mm9::chr9:59797133..59797145,-p7@Nr2e3
Mm9::chr9:60330166..60330193,+p@chr9:60330166..60330193
+
Mm9::chr9:64574390..64574394,-p7@Rab11a
Mm9::chr9:66423835..66423855,-p9@Usp3
Mm9::chr9:78432883..78432894,-p@chr9:78432883..78432894
-
Mm9::chr9:78432920..78432931,-p@chr9:78432920..78432931
-
Mm9::chr9:78432932..78432942,-p@chr9:78432932..78432942
-
Mm9::chr9:78432956..78432980,-p@chr9:78432956..78432980
-
Mm9::chr9:78435775..78435854,-p1@Slc17a5
Mm9::chrX:136342792..136342806,+p@chrX:136342792..136342806
+
Mm9::chrX:68828930..68828973,+p@chrX:68828930..68828973
+
Mm9::chrX:71173335..71173359,-p4@Renbp
Mm9::chrX:71173379..71173396,-p5@Renbp
Mm9::chrX:71173431..71173440,-p7@Renbp
Mm9::chrX:71175859..71175871,-p@chrX:71175859..71175871
-
Mm9::chrX:71176056..71176067,-p6@Renbp
Mm9::chrX:71176074..71176089,-p3@Renbp
Mm9::chrX:93160531..93160569,-p@chrX:93160531..93160569
-
Mm9::chrX:93165422..93165431,-p@chrX:93165422..93165431
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005764lysosome0.0237295269921118
GO:0000323lytic vacuole0.0237295269921118
GO:0005773vacuole0.0273582182242956



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
intestine7.06e-0731


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.13.3108e-05
MA0004.11.35399
MA0006.12.94262e-05
MA0007.10.00102766
MA0009.10.904761
MA0014.16.07027e-11
MA0017.19.13918
MA0019.11.16
MA0024.10.0250823
MA0025.10.044009
MA0027.11.08072
MA0028.10.000452121
MA0029.10.444074
MA0030.10.0215723
MA0031.10.22272
MA0038.10.113439
MA0040.10.429782
MA0041.10.0304049
MA0042.18.24956e-05
MA0043.10.0170838
MA0046.16.27729
MA0048.10.0525965
MA0050.10.409344
MA0051.10.207055
MA0052.10.00866889
MA0055.10.946196
MA0056.10
MA0057.13.6953e-06
MA0058.13.29138
MA0059.13.88537
MA0060.10.0794788
MA0061.10.0471547
MA0063.10
MA0066.10.90111
MA0067.10.967218
MA0068.10.00131887
MA0069.10.124916
MA0070.10.116798
MA0071.10.864997
MA0072.11.24134
MA0073.12.95692e-12
MA0074.11.86933
MA0076.10.00182913
MA0077.10.0936362
MA0078.10.100768
MA0081.10.161851
MA0083.10.198745
MA0084.10.24887
MA0087.10.309838
MA0088.10.0301223
MA0089.10
MA0090.10.166656
MA0091.10.698319
MA0092.10.692964
MA0093.13.16764
MA0095.10
MA0098.10
MA0100.10.157722
MA0101.10.0849647
MA0103.12.04836
MA0105.10.00023013
MA0106.10.0017548
MA0107.10.0106738
MA0108.20.768047
MA0109.10
MA0111.10.285662
MA0113.10.233783
MA0114.110.0036
MA0115.10.961735
MA0116.10.121075
MA0117.11.57389
MA0119.10.341935
MA0122.11.27451
MA0124.10.060687
MA0125.11.00008
MA0130.10
MA0131.10.188434
MA0132.10
MA0133.10
MA0135.10.458296
MA0136.10.0816995
MA0139.10.00111862
MA0140.12.66877
MA0141.12.66564
MA0142.10.200211
MA0143.10.0963375
MA0144.10.761261
MA0145.10.322254
MA0146.10.222794
MA0147.10.37382
MA0148.10.228611
MA0149.111.5955
MA0062.25.495e-06
MA0035.25.09434
MA0039.20.00131257
MA0138.20.0157346
MA0002.20.699694
MA0137.20.77787
MA0104.20.215487
MA0047.20.572477
MA0112.21.9204
MA0065.21.08494
MA0150.11.64711
MA0151.10
MA0152.11.20108
MA0153.14.33836
MA0154.12.37882
MA0155.10.214021
MA0156.10.108047
MA0157.10.425561
MA0158.10
MA0159.10.64983
MA0160.11.32306
MA0161.10
MA0162.19.37231e-11
MA0163.10.0479752
MA0164.10.224327
MA0080.20.0826613
MA0018.20.00828825
MA0099.20.418417
MA0079.20
MA0102.22.16895
MA0258.12.93947
MA0259.10.0213071
MA0442.10
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:61&oldid=2573456"