MCL coexpression mm9:1747
From FANTOM5_SSTAR
Phase1 CAGE Peaks
| Short description | |
|---|---|
| Mm9::chr1:181890115..181890211,+ | p1@Cdc42bpa |
| Mm9::chr5:8567093..8567110,+ | p@chr5:8567093..8567110 + |
| Mm9::chr5:8567113..8567123,+ | p@chr5:8567113..8567123 + |
| Mm9::chr5:8606564..8606568,+ | p@chr5:8606564..8606568 + |
| Mm9::chr9:42914037..42914109,- | p1@Arhgef12 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0005083 | small GTPase regulator activity | 0.00509899699284794 |
| GO:0030695 | GTPase regulator activity | 0.00821737696392652 |
| GO:0007097 | nuclear migration | 0.00821737696392652 |
| GO:0040023 | establishment of nucleus localization | 0.00986004192010371 |
| GO:0051647 | nucleus localization | 0.00986004192010371 |
| GO:0051656 | establishment of organelle localization | 0.027715412429569 |
| GO:0007242 | intracellular signaling cascade | 0.027715412429569 |
| GO:0051640 | organelle localization | 0.027715412429569 |
| GO:0019992 | diacylglycerol binding | 0.0403401200135352 |
| GO:0005089 | Rho guanyl-nucleotide exchange factor activity | 0.0403401200135352 |
| GO:0035023 | regulation of Rho protein signal transduction | 0.0403401200135352 |
| GO:0005088 | Ras guanyl-nucleotide exchange factor activity | 0.0403401200135352 |
| GO:0000226 | microtubule cytoskeleton organization and biogenesis | 0.0403871732472332 |
| GO:0007266 | Rho protein signal transduction | 0.0468573864306494 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| anatomical conduit | 1.60e-16 | 122 |
| tube | 1.73e-15 | 114 |
| structure with developmental contribution from neural crest | 1.86e-11 | 92 |
| multi-cellular organism | 2.27e-10 | 333 |
| regional part of nervous system | 5.30e-10 | 54 |
| neurectoderm | 4.27e-09 | 64 |
| neural plate | 4.27e-09 | 64 |
| presumptive neural plate | 4.27e-09 | 64 |
| neural tube | 5.03e-09 | 52 |
| neural rod | 5.03e-09 | 52 |
| future spinal cord | 5.03e-09 | 52 |
| neural keel | 5.03e-09 | 52 |
| ecto-epithelium | 5.37e-09 | 73 |
| ectoderm-derived structure | 1.21e-08 | 95 |
| ectoderm | 1.21e-08 | 95 |
| presumptive ectoderm | 1.21e-08 | 95 |
| brain | 2.69e-08 | 47 |
| future brain | 2.69e-08 | 47 |
| central nervous system | 6.90e-08 | 73 |
| regional part of brain | 8.23e-08 | 46 |
| nervous system | 8.56e-08 | 75 |
| tissue | 2.31e-07 | 349 |
| pre-chordal neural plate | 4.17e-07 | 49 |
| lung | 6.52e-07 | 14 |
| respiratory tube | 6.52e-07 | 14 |
| respiration organ | 6.52e-07 | 14 |
| pair of lungs | 6.52e-07 | 14 |
| lung primordium | 6.52e-07 | 14 |
| lung bud | 6.52e-07 | 14 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
| MA0003.1 | 1.36559 |
| MA0004.1 | 0.603793 |
| MA0006.1 | 0.419915 |
| MA0007.1 | 0.587678 |
| MA0009.1 | 1.06266 |
| MA0014.1 | 0.418772 |
| MA0017.1 | 0.449113 |
| MA0019.1 | 0.874061 |
| MA0024.1 | 1.01759 |
| MA0025.1 | 1.30092 |
| MA0027.1 | 2.72141 |
| MA0028.1 | 0.43138 |
| MA0029.1 | 0.995171 |
| MA0030.1 | 1.00195 |
| MA0031.1 | 2.2151 |
| MA0038.1 | 0.757669 |
| MA0040.1 | 1.07552 |
| MA0041.1 | 0.522007 |
| MA0042.1 | 0.507715 |
| MA0043.1 | 1.1618 |
| MA0046.1 | 1.09955 |
| MA0048.1 | 0.593503 |
| MA0050.1 | 0.645342 |
| MA0051.1 | 0.767098 |
| MA0052.1 | 1.08379 |
| MA0055.1 | 0.0851423 |
| MA0056.1 | 0 |
| MA0057.1 | 0.562607 |
| MA0058.1 | 0.50032 |
| MA0059.1 | 0.513699 |
| MA0060.1 | 0.330907 |
| MA0061.1 | 0.364227 |
| MA0063.1 | 0 |
| MA0066.1 | 0.746072 |
| MA0067.1 | 1.41352 |
| MA0068.1 | 0.197245 |
| MA0069.1 | 1.08414 |
| MA0070.1 | 1.07418 |
| MA0071.1 | 0.644448 |
| MA0072.1 | 1.06547 |
| MA0073.1 | 0.0481612 |
| MA0074.1 | 0.708108 |
| MA0076.1 | 1.1853 |
| MA0077.1 | 1.04318 |
| MA0078.1 | 0.801834 |
| MA0081.1 | 0.53877 |
| MA0083.1 | 1.16099 |
| MA0084.1 | 1.74401 |
| MA0087.1 | 1.11687 |
| MA0088.1 | 0.453686 |
| MA0089.1 | 0 |
| MA0090.1 | 1.39153 |
| MA0091.1 | 0.617887 |
| MA0092.1 | 0.567278 |
| MA0093.1 | 0.440484 |
| MA0095.1 | 0 |
| MA0098.1 | 0 |
| MA0100.1 | 0.695835 |
| MA0101.1 | 0.523409 |
| MA0103.1 | 0.460936 |
| MA0105.1 | 1.28296 |
| MA0106.1 | 0.809991 |
| MA0107.1 | 0.454197 |
| MA0108.2 | 0.897859 |
| MA0109.1 | 0 |
| MA0111.1 | 0.582193 |
| MA0113.1 | 0.780358 |
| MA0114.1 | 0.361633 |
| MA0115.1 | 1.16466 |
| MA0116.1 | 0.419688 |
| MA0117.1 | 1.13165 |
| MA0119.1 | 0.524046 |
| MA0122.1 | 1.15196 |
| MA0124.1 | 1.35963 |
| MA0125.1 | 1.28445 |
| MA0130.1 | 0 |
| MA0131.1 | 0.869325 |
| MA0132.1 | 0 |
| MA0133.1 | 0 |
| MA0135.1 | 1.19898 |
| MA0136.1 | 0.729175 |
| MA0139.1 | 0.295945 |
| MA0140.1 | 0.695713 |
| MA0141.1 | 0.482463 |
| MA0142.1 | 0.950155 |
| MA0143.1 | 0.797553 |
| MA0144.1 | 0.956957 |
| MA0145.1 | 0.157686 |
| MA0146.1 | 0.21827 |
| MA0147.1 | 0.378658 |
| MA0148.1 | 0.621195 |
| MA0149.1 | 0.529387 |
| MA0062.2 | 0.706751 |
| MA0035.2 | 0.700704 |
| MA0039.2 | 0.489701 |
| MA0138.2 | 0.861035 |
| MA0002.2 | 0.299191 |
| MA0137.2 | 0.479301 |
| MA0104.2 | 0.315156 |
| MA0047.2 | 0.75686 |
| MA0112.2 | 0.157681 |
| MA0065.2 | 0.158101 |
| MA0150.1 | 0.587557 |
| MA0151.1 | 0 |
| MA0152.1 | 0.756973 |
| MA0153.1 | 1.21594 |
| MA0154.1 | 1.11105 |
| MA0155.1 | 0.173445 |
| MA0156.1 | 0.469089 |
| MA0157.1 | 0.91689 |
| MA0158.1 | 0 |
| MA0159.1 | 0.389847 |
| MA0160.1 | 0.624415 |
| MA0161.1 | 0 |
| MA0162.1 | 1.87338 |
| MA0163.1 | 0.497328 |
| MA0164.1 | 0.729558 |
| MA0080.2 | 0.455167 |
| MA0018.2 | 0.739807 |
| MA0099.2 | 0.854449 |
| MA0079.2 | 2.32359 |
| MA0102.2 | 1.79669 |
| MA0258.1 | 0.346619 |
| MA0259.1 | 0.366802 |
| MA0442.1 | 0 |
