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Coexpression cluster:C885

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Full id: C885_breast_Intestinal_MCF7_Prostate_small_colon_Hepatocyte



Phase1 CAGE Peaks

Hg19::chr11:72493722..72493753,-p9@STARD10
Hg19::chr14:38060540..38060566,-p@chr14:38060540..38060566
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Hg19::chr14:38061906..38061927,-p@chr14:38061906..38061927
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Hg19::chr14:38064495..38064506,-p4@FOXA1
Hg19::chr14:38064536..38064550,-p7@FOXA1
Hg19::chr14:38064554..38064559,-p12@FOXA1
Hg19::chr14:38064572..38064584,-p5@FOXA1
Hg19::chr14:38064590..38064606,-p2@FOXA1
Hg19::chr14:38064797..38064843,+p1@TTC6


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0042593glucose homeostasis0.0231308033864625
GO:0033500carbohydrate homeostasis0.0231308033864625
GO:0048754branching morphogenesis of a tube0.0231308033864625
GO:0001763morphogenesis of a branching structure0.0231308033864625
GO:0030855epithelial cell differentiation0.0231308033864625
GO:0030324lung development0.0231308033864625
GO:0030323respiratory tube development0.0231308033864625
GO:0002009morphogenesis of an epithelium0.029644417655839
GO:0035239tube morphogenesis0.033114259988823
GO:0042445hormone metabolic process0.033114259988823
GO:0035295tube development0.0400073614017467
GO:0045944positive regulation of transcription from RNA polymerase II promoter0.0435551382564899



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

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ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.