Template:NonRedundantMotifRender

Name:	{{{name}}}
Species:	{{{sample_species}}}
Genomic View:	zenbu , UCSC

Homer de novo Motif Results for CNhs10632_vs_median_8-fold_up-300+50merged

P-value threshold: 1e-15
Matrix similarity threshold: 0.75
Information content threshold: 1.5
Minimum target frequency: 50
Minimum background percentage: -1
Total target sequences = 5327
Total background sequences = 43180

Rank	Motif (click to show PWM)	Target hits	Background	P-value	Best Match/Details and Motif File
1		9.14%	1.14%	1e-264	JUN.p2.SwissRegulon.nucfreq
2		11.38%	2.45%	1e-209	SOX10_si_HM09
3		7.12%	1.28%	1e-153	RFX1..5_RFXANK_RFXAP.p2.SwissRegulon.nucfreq
4		14.68%	5.34%	1e-140	CREB1_f1_HM09
5		60.12%	44.92%	1e-109	NFYA_f1_HM09
6		14.49%	6.31%	1e-99	BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer
7		26.46%	15.18%	1e-98	E4F1_f1_HM09
8		15.02%	7.77%	1e-69	RFX1_f1_HM09
9		25.03%	15.74%	1e-67	SP1_f1_HM09
10		5.73%	2.01%	1e-55	ATF1_si_HM09
11		5.88%	2.10%	1e-55	NFYB_f1_HM09
12		11.43%	5.88%	1e-52	NRF1(NRF)/MCF7-NRF1-ChIP-Seq/Homer
13		14.31%	8.32%	1e-47	ATF5_CREB3.p2.SwissRegulon.nucfreq
14		4.98%	1.78%	1e-46	RFX2_f1_HM09
15		65.83%	56.15%	1e-46	MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer
16		5.01%	1.87%	1e-44	Rfx1(HTH)/NPC-Rfx1-ChIP-Seq/Homer
17		45.42%	36.08%	1e-43	ATF3_f1_HM09
18		3.57%	1.10%	1e-41	ATF2.p2.SwissRegulon.nucfreq
19		42.47%	33.66%	1e-40	PRDM14(Zf)/H1-PRDM14-ChIP-Seq/Homer
20		13.91%	8.44%	1e-39	ELK1_f1_HM09
21		8.04%	4.06%	1e-38	MYB.p2.SwissRegulon.nucfreq
22		43.56%	35.32%	1e-34	E2F5_do_HM09
23		51.05%	42.61%	1e-34	CDX1_f1_HM09
24		29.05%	22.01%	1e-32	ELF1(ETS)/Jurkat-ELF1-ChIP-Seq/Homer
25		4.41%	1.84%	1e-31	BATF_si_HM09
26		9.31%	5.37%	1e-30	MAFG_si_HM09
27		24.69%	18.41%	1e-29	HBP1_HMGB_SSRP1_UBTF.p2.SwissRegulon.nucfreq
28		25.03%	18.78%	1e-28	BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer
29		18.64%	13.45%	1e-25	ZBTB33/GM12878-ZBTB33-ChIP-Seq/Homer
30		25.25%	19.53%	1e-23	E2F(E2F)/Cell-Cycle-Exp/Homer
31		22.64%	17.33%	1e-22	MYB_f1_HM09
32		48.33%	41.62%	1e-22	SPIB.p2.SwissRegulon.nucfreq
33		5.91%	3.25%	1e-22	MYB.p2.SwissRegulon.nucfreq
34		1.69%	0.49%	1e-22	HSF2_si_HM09
35		87.66%	82.97%	1e-20	Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq/Homer
36		12.20%	8.41%	1e-20	NRF1.p2.SwissRegulon.nucfreq
37		49.36%	42.96%	1e-20	TGIF1_f1_HM09
38		1.88%	0.62%	1e-20	CREB1_f1_HM09
39		3.76%	1.81%	1e-20	ETS:E-box/HPC7-Scl-ChIP-Seq/Homer
40		13.67%	9.71%	1e-19	PRGR_f1_HM09
41		9.01%	5.88%	1e-19	ZBT7B_si_HM09
42		50.54%	44.43%	1e-18	TBP.p2.SwissRegulon.nucfreq
43		3.32%	1.60%	1e-18	ELF1(ETS)/Jurkat-ELF1-ChIP-Seq/Homer
44		59.59%	53.74%	1e-17	ISL1_f1_HM09
45		5.43%	3.16%	1e-17	SRBP2_f1_HM09
46		2.97%	1.41%	1e-16	NFY{A,B,C}.p2.SwissRegulon.nucfreq

Details

Transcriptome profiling

hCAGE	{{{profile_hcage}}}
RNA-seq	{{{profile_rnaseq}}}
smallRNA seq	{{{profile_srnaseq}}}
nanoCAGEscan	{{{profile_cagescan}}}

Sample info

strain	{{{sample_strain}}}
tissue	{{{sample_tissue}}}
dev_stage	{{{sample_dev_stage}}}
sex	{{{sample_sex}}}
age	{{{sample_age}}}
ethnicity	{{{sample_ethnicity}}}
cell_type	{{{sample_cell_type}}}
cell_line	{{{sample_cell_line}}}
collaboration	{{{sample_collaboration}}}
Experimental condition	{{{sample_experimental_condition}}}
disease	{{{sample_disease}}}
cell_lot	{{{sample_cell_lot}}}
cell_catalog	{{{sample_cell_catalog}}}
company	{{{sample_company}}}
donor(cell lot)	{{{sample_donor(cell lot)}}}
Note	{{{sample_note}}}

RNA info

sample_id	{{{sample_id}}}
tube_id	{{{rna_tube_id}}}
box	{{{rna_box}}}
position	{{{rna_position}}}
lot_number	{{{rna_lot_number}}}
catalog_number	{{{rna_catalog_number}}}
RIN	{{{rna_rin}}}
OD260/230	{{{rna_od260/230}}}
OD260/280	{{{rna_od260/280}}}
sample_type	{{{rna_sample_type}}}
extraction_protocol	{{{rna_extraction_protocol}}}
weight_ug	{{{rna_weight_ug}}}
concentration	{{{rna_concentration}}}

Parent ontology

is_a relathionship
{{{is_a}}}

part_of relathionship
{{{part_of}}}

has_quality relathionship
{{{has_quality}}}

Ancestors in FF ontology

Anatomy	Cell type	Disease
UBERON:	CL:	Property "Ancestors in disease facet" (as page type) with input value "{{{ancestors_in_disease_facet}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.DOID: