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MCL coexpression mm9:197

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:106474684..106474698,-p2@Tex2
Mm9::chr11:106476942..106476974,-p@chr11:106476942..106476974
-
Mm9::chr11:82598872..82598880,+p@chr11:82598872..82598880
+
Mm9::chr11:98562656..98562660,+p1@Csf3
Mm9::chr12:105246946..105246963,-p@chr12:105246946..105246963
-
Mm9::chr13:37673077..37673087,+p@chr13:37673077..37673087
+
Mm9::chr13:37690588..37690597,+p@chr13:37690588..37690597
+
Mm9::chr13:37690629..37690642,+p@chr13:37690629..37690642
+
Mm9::chr14:41821512..41821541,-p2@5730469M10Rik
Mm9::chr14:41821545..41821564,-p5@5730469M10Rik
Mm9::chr14:41821568..41821575,-p10@5730469M10Rik
Mm9::chr14:41821576..41821587,-p7@5730469M10Rik
Mm9::chr14:41821652..41821653,-p16@5730469M10Rik
Mm9::chr14:41844256..41844259,-p@chr14:41844256..41844259
-
Mm9::chr14:41844272..41844285,-p@chr14:41844272..41844285
-
Mm9::chr14:70215715..70215728,-p@chr14:70215715..70215728
-
Mm9::chr15:37829448..37829462,-p@chr15:37829448..37829462
-
Mm9::chr15:84686971..84686976,-p13@Phf21b
Mm9::chr17:27174755..27174772,+p@chr17:27174755..27174772
+
Mm9::chr17:48572171..48572179,-p3@Apobec2
Mm9::chr17:56874249..56874264,+p@chr17:56874249..56874264
+
Mm9::chr19:28635556..28635573,-p@chr19:28635556..28635573
-
Mm9::chr1:84931664..84931683,-p2@Slc16a14
Mm9::chr3:101640069..101640100,-p1@Mab21l3
Mm9::chr3:152741238..152741255,+p@chr3:152741238..152741255
+
Mm9::chr3:29789930..29789953,+p1@uc008oul.1
Mm9::chr3:92169803..92169812,+p@chr3:92169803..92169812
+
Mm9::chr4:140382459..140382505,-p@chr4:140382459..140382505
-
Mm9::chr4:140391650..140391664,-p@chr4:140391650..140391664
-
Mm9::chr4:140401685..140401700,-p1@Padi1
Mm9::chr5:130695404..130695419,+p6@0610007L01Rik
Mm9::chr5:130756812..130756822,+p@chr5:130756812..130756822
+
Mm9::chr5:136147364..136147370,+p@chr5:136147364..136147370
+
Mm9::chr5:87212132..87212143,-p@chr5:87212132..87212143
-
Mm9::chr5:87212194..87212203,-p@chr5:87212194..87212203
-
Mm9::chr6:108647803..108647813,+p@chr6:108647803..108647813
+
Mm9::chr6:89090986..89091008,+p1@Gm1965
Mm9::chr7:144756289..144756303,-p@chr7:144756289..144756303
-
Mm9::chr7:144756380..144756389,-p@chr7:144756380..144756389
-
Mm9::chr7:26197921..26197932,-p3@Cxcl17
Mm9::chr7:86993059..86993076,-p3@Anpep
Mm9::chr7:96676045..96676058,-p5@Prss23
Mm9::chr8:120238119..120238127,-p@chr8:120238119..120238127
-
Mm9::chr8:122217679..122217695,-p@chr8:122217679..122217695
-
Mm9::chr9:105968829..105968846,-p@chr9:105968829..105968846
-
Mm9::chrX:163056592..163056598,-p@chrX:163056592..163056598
-
Mm9::chrX:163056608..163056615,-p@chrX:163056608..163056615
-
Mm9::chrX:163056618..163056625,-p@chrX:163056618..163056625
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
female reproductive system4.33e-359
female organism8.23e-2911
female reproductive organ1.47e-258
internal female genitalia2.45e-235
vagina4.85e-141
oviduct6.50e-141
uterus or analog1.55e-131
embryonic uterus1.56e-134
uterus1.56e-134
internal genitalia2.54e-139
reproductive structure1.96e-1226
reproductive system1.96e-1226
reproductive organ7.18e-0924


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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