Personal tools

MCL coexpression mm9:563

From FANTOM5_SSTAR

Revision as of 18:33, 26 November 2012 by Autoedit (talk | contribs)
Jump to: navigation, search


Phase1 CAGE Peaks

 Short description
Mm9::chr11:58193138..58193178,+p@chr11:58193138..58193178
+
Mm9::chr11:67584617..67584636,-p1@Glp2r
Mm9::chr12:109918660..109918664,-p@chr12:109918660..109918664
-
Mm9::chr12:13419575..13419591,+p@chr12:13419575..13419591
+
Mm9::chr14:69200097..69200110,-p3@Adamdec1
Mm9::chr14:69200135..69200149,-p1@Adamdec1
Mm9::chr14:69200154..69200178,-p2@Adamdec1
Mm9::chr14:69200229..69200240,-p4@Adamdec1
Mm9::chr17:25506212..25506225,+p1@Tpsg1
Mm9::chr17:25506273..25506282,+p3@Tpsg1
Mm9::chr17:31579859..31579873,+p4@Pde9a
Mm9::chr5:99365674..99365677,-p@chr5:99365674..99365677
-
Mm9::chr5:99450614..99450617,-p@chr5:99450614..99450617
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0004967glucagon receptor activity0.020159412520626
GO:00475553',5'-cyclic-GMP phosphodiesterase activity0.0352644772779151
GO:0004175endopeptidase activity0.0363121210749945
GO:0001633secretin-like receptor activity0.0363121210749945
GO:0016787hydrolase activity0.0363121210749945
GO:00041143',5'-cyclic-nucleotide phosphodiesterase activity0.0363121210749945
GO:0004112cyclic-nucleotide phosphodiesterase activity0.0363121210749945
GO:0006508proteolysis0.0363121210749945
GO:0008233peptidase activity0.0384766220589543



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
gastrointestinal system6.46e-2147
intestine1.40e-1631


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}