Personal tools

NonredundantMotifs:1

From FANTOM5_SSTAR

Revision as of 10:45, 13 May 2013 by Autoedit (talk | contribs)
Jump to: navigation, search

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known1
  • db :HOCOMOCO
  • Id :ARI3A_f1
  • name  :
  • score :0.16970272024724345
  • External refs:
EntrezGene:1820
UniProt:1820

  • Internal refs:
EntrezGene:1820


Motif matrix
P0ACGT
128.4982910927716342.508544536142000711.588863175876794.515380165055598
247.1110789698460.00.00.0
30.00.00.047.111078969846
40.00.00.047.111078969846
547.1110789698460.00.00.0
647.1110789698460.00.00.0
739.0837364541915950.00.08.027342515654405

Sub Motif Members