NonredundantMotifs:52

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :known52
• db :SWISSREGULON
• Id :PAX5.p2
• name :PAX5
• score :4.345335641326596
  
• External refs:

EntrezGene:PAX5
UniProt:PAX5

• Internal refs:

EntrezGene:PAX5

Motif matrix

PO A C G T 1 51.564468 13.26941 83.587598 20.713344 2 29.769706 1.549557 137.006756 0.808801 3 47.331201 53.0085 60.032086 8.763033 4 6.262884 20.412521 103.823936 38.635479 5 9.413407 119.391552 20.750723 19.579138 6 80.748263 37.917131 27.549326 22.9201 7 22.669395 77.5497 46.95271 21.963015 8 0.851768 38.78142 47.634237 81.867395 9 6.597761 13.846531 143.939141 4.751387 10 68.84423 28.049027 63.507019 8.734544 11 62.480218 3.161928 86.477998 17.014676 12 2.524252 0.796676 165.813892 0 13 31.641515 119.872266 8.739038 8.882001 14 22.804279 0.865004 142.200698 3.264839 15 10.116801 3.295676 99.181444 56.540899 16 67.115827 7.582506 93.683599 0.752888 17 50.592982 5.386698 109.96488 3.19026 18 26.392076 137.395981 0 5.346763 19 29.592252 74.422791 64.150964 0.968813 20 43.880475 0.851768 116.951804 7.450773