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MCL coexpression mm9:106

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:111668149..111668158,-p@chr10:111668149..111668158
-
Mm9::chr10:126918746..126918755,+p21@R3hdm2
Mm9::chr10:39338383..39338401,-p@chr10:39338383..39338401
-
Mm9::chr10:97030695..97030725,+p@chr10:97030695..97030725
+
Mm9::chr11:46503808..46503822,-p7@Timd2
Mm9::chr11:46564008..46564045,+p1@Havcr1
Mm9::chr11:46564064..46564079,+p2@Havcr1
Mm9::chr11:46564098..46564107,+p4@Havcr1
Mm9::chr11:46565908..46565916,+p@chr11:46565908..46565916
+
Mm9::chr11:68214559..68214578,-p10@Ntn1
Mm9::chr11:68214589..68214606,-p11@Ntn1
Mm9::chr12:104620760..104620761,-p@chr12:104620760..104620761
-
Mm9::chr12:104620776..104620787,-p@chr12:104620776..104620787
-
Mm9::chr12:80170796..80170800,+p@chr12:80170796..80170800
+
Mm9::chr12:92638878..92638892,+p@chr12:92638878..92638892
+
Mm9::chr12:92638906..92638917,+p@chr12:92638906..92638917
+
Mm9::chr12:92639430..92639462,+p1@Tshr
Mm9::chr12:92639464..92639478,+p2@Tshr
Mm9::chr12:92642462..92642493,+p@chr12:92642462..92642493
+
Mm9::chr13:27404521..27404525,+p2@Prl6a1
Mm9::chr13:32557315..32557329,+p@chr13:32557315..32557329
+
Mm9::chr13:61036161..61036172,-p@chr13:61036161..61036172
-
Mm9::chr13:61036176..61036186,-p@chr13:61036176..61036186
-
Mm9::chr13:61037911..61037930,-p1@Ctla2a
Mm9::chr13:61038143..61038148,-p3@Ctla2a
Mm9::chr13:95829053..95829071,-p@chr13:95829053..95829071
-
Mm9::chr14:35235900..35235910,-p@chr14:35235900..35235910
-
Mm9::chr14:35235937..35235940,-p@chr14:35235937..35235940
-
Mm9::chr14:41785917..41785953,+p@chr14:41785917..41785953
+
Mm9::chr14:41785974..41785977,+p@chr14:41785974..41785977
+
Mm9::chr14:56799615..56799618,-p@chr14:56799615..56799618
-
Mm9::chr14:56825210..56825237,+p@chr14:56825210..56825237
+
Mm9::chr15:73750444..73750448,+p@chr15:73750444..73750448
+
Mm9::chr16:20784809..20784812,-p@chr16:20784809..20784812
-
Mm9::chr16:20803423..20803434,-p@chr16:20803423..20803434
-
Mm9::chr16:30094079..30094085,+p@chr16:30094079..30094085
+
Mm9::chr16:92291354..92291359,+p@chr16:92291354..92291359
+
Mm9::chr16:96030326..96030329,-p1@ENSMUST00000156615
Mm9::chr17:25445587..25445592,+p1@Prss28
Mm9::chr17:25455594..25455602,+p1@Prss29
Mm9::chr17:35881045..35881083,-p@chr17:35881045..35881083
-
Mm9::chr17:35966913..35966936,+p5@Flot1
Mm9::chr17:69186402..69186433,+p1@Tmem200c
Mm9::chr18:68749095..68749099,-p@chr18:68749095..68749099
-
Mm9::chr19:29409136..29409142,-p1@Rln1
Mm9::chr19:55338956..55338996,+p@chr19:55338956..55338996
+
Mm9::chr1:164118982..164118990,-p@chr1:164118982..164118990
-
Mm9::chr1:170145614..170145620,-p@chr1:170145614..170145620
-
Mm9::chr1:174532714..174532721,-p3@Fcrl6
Mm9::chr1:17591974..17591994,+p1@Pi15
Mm9::chr1:188447625..188447635,-p@chr1:188447625..188447635
-
Mm9::chr1:188448176..188448182,-p@chr1:188448176..188448182
-
Mm9::chr1:188449089..188449095,-p@chr1:188449089..188449095
-
Mm9::chr1:188457900..188457913,-p@chr1:188457900..188457913
-
Mm9::chr1:188513246..188513289,-p@chr1:188513246..188513289
-
Mm9::chr1:188528872..188528902,-p4@Tgfb2
Mm9::chr1:188528892..188528901,+p@chr1:188528892..188528901
+
Mm9::chr1:188529773..188529798,+p@chr1:188529773..188529798
+
Mm9::chr1:188529859..188529878,-p1@Tgfb2
Mm9::chr1:188533348..188533350,+p@chr1:188533348..188533350
+
Mm9::chr1:40158220..40158223,+p@chr1:40158220..40158223
+
Mm9::chr1:52197272..52197276,-p@chr1:52197272..52197276
-
Mm9::chr1:54541662..54541686,-p@chr1:54541662..54541686
-
Mm9::chr2:7004903..7004922,-p@chr2:7004903..7004922
-
Mm9::chr2:75420503..75420506,+p@chr2:75420503..75420506
+
Mm9::chr3:107171294..107171301,+p@chr3:107171294..107171301
+
Mm9::chr3:107171302..107171307,+p@chr3:107171302..107171307
+
Mm9::chr3:107171337..107171347,+p@chr3:107171337..107171347
+
Mm9::chr3:121318996..121319004,-p@chr3:121318996..121319004
-
Mm9::chr3:131151965..131151985,-p@chr3:131151965..131151985
-
Mm9::chr3:131153693..131153706,-p@chr3:131153693..131153706
-
Mm9::chr3:131154017..131154021,-p@chr3:131154017..131154021
-
Mm9::chr3:131154239..131154252,-p@chr3:131154239..131154252
-
Mm9::chr3:131154291..131154300,-p@chr3:131154291..131154300
-
Mm9::chr3:131154350..131154362,-p@chr3:131154350..131154362
-
Mm9::chr3:131154363..131154373,-p@chr3:131154363..131154373
-
Mm9::chr3:131154401..131154412,-p@chr3:131154401..131154412
-
Mm9::chr3:131154523..131154532,+p@chr3:131154523..131154532
+
Mm9::chr3:142217879..142217886,+p@chr3:142217879..142217886
+
Mm9::chr4:114143506..114143510,-p@chr4:114143506..114143510
-
Mm9::chr4:141748867..141748871,-p@chr4:141748867..141748871
-
Mm9::chr4:149369914..149369920,-p@chr4:149369914..149369920
-
Mm9::chr5:113709567..113709589,-p4@Sgsm1
Mm9::chr5:113709592..113709626,-p2@Sgsm1
Mm9::chr5:136532993..136533001,+p11@2310043J07Rik
Mm9::chr5:136533008..136533013,+p9@2310043J07Rik
Mm9::chr5:143564663..143564666,-p@chr5:143564663..143564666
-
Mm9::chr5:20878514..20878532,+p1@Fgl2
Mm9::chr5:8808095..8808106,+p@chr5:8808095..8808106
+
Mm9::chr5:92691807..92691814,-p12@Naaa
Mm9::chr5:92691818..92691825,-p13@Naaa
Mm9::chr6:106679895..106679904,-p@chr6:106679895..106679904
-
Mm9::chr6:129457174..129457189,-p1@Olr1
Mm9::chr6:145024626..145024627,-p21@Bcat1
Mm9::chr6:38060420..38060425,-p@chr6:38060420..38060425
-
Mm9::chr6:38097441..38097447,-p13@D630045J12Rik
Mm9::chr6:38097449..38097457,-p16@D630045J12Rik
Mm9::chr6:65094976..65094993,-p4@Hpgds
Mm9::chr7:126744627..126744632,-p@chr7:126744627..126744632
-
Mm9::chr7:130565883..130565888,+p@chr7:130565883..130565888
+
Mm9::chr7:137388074..137388119,-p@chr7:137388074..137388119
-
Mm9::chr7:147276829..147276830,+p@chr7:147276829..147276830
+
Mm9::chr7:147279287..147279301,+p1@Prap1
Mm9::chr7:147282863..147282877,+p@chr7:147282863..147282877
+
Mm9::chr7:147282952..147282979,+p@chr7:147282952..147282979
+
Mm9::chr7:147283020..147283051,+p@chr7:147283020..147283051
+
Mm9::chr7:17319014..17319028,+p@chr7:17319014..17319028
+
Mm9::chr7:17319755..17319757,+p@chr7:17319755..17319757
+
Mm9::chr8:105871431..105871446,-p@chr8:105871431..105871446
-
Mm9::chr8:126016607..126016612,+p10@Afg3l1
Mm9::chr8:42187234..42187277,-p@chr8:42187234..42187277
-
Mm9::chr8:73107433..73107436,+p@chr8:73107433..73107436
+
Mm9::chr8:98020346..98020369,+p@chr8:98020346..98020369
+
Mm9::chr9:116079513..116079518,-p@chr9:116079513..116079518
-
Mm9::chr9:116084558..116084569,-p5@Tgfbr2
Mm9::chr9:122331238..122331246,+p@chr9:122331238..122331246
+
Mm9::chr9:28482580..28482586,+p@chr9:28482580..28482586
+
Mm9::chr9:85243991..85243994,-p@chr9:85243991..85243994
-
Mm9::chrX:71447751..71447759,+p@chrX:71447751..71447759
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005615extracellular space0.0132416920853748
GO:0044421extracellular region part0.0132416920853748
GO:0004263chymotrypsin activity0.0322211873847222
GO:0004295trypsin activity0.0322211873847222
GO:0007507heart development0.0322211873847222
GO:0002651positive regulation of tolerance induction to self antigen0.0322211873847222
GO:0002649regulation of tolerance induction to self antigen0.0322211873847222
GO:0004996thyroid-stimulating hormone receptor activity0.0322211873847222
GO:0002663positive regulation of B cell tolerance induction0.0322211873847222
GO:0001880Mullerian duct regression0.0322211873847222
GO:0002514B cell tolerance induction0.0322211873847222
GO:0045616regulation of keratinocyte differentiation0.0322211873847222
GO:0002661regulation of B cell tolerance induction0.0322211873847222
GO:0045617negative regulation of keratinocyte differentiation0.0322211873847222
GO:0048382mesendoderm development0.0322211873847222
GO:0004702receptor signaling protein serine/threonine kinase activity0.0348346947515786
GO:0030097hemopoiesis0.0366462529633387
GO:0008283cell proliferation0.0366462529633387
GO:0009309amine biosynthetic process0.0366462529633387
GO:0002666positive regulation of T cell tolerance induction0.0366462529633387
GO:0002643regulation of tolerance induction0.0366462529633387
GO:0004084branched-chain-amino-acid transaminase activity0.0366462529633387
GO:0002664regulation of T cell tolerance induction0.0366462529633387
GO:0002645positive regulation of tolerance induction0.0366462529633387
GO:0009082branched chain family amino acid biosynthetic process0.0366462529633387
GO:0002517T cell tolerance induction0.0366462529633387
GO:0040012regulation of locomotion0.0366462529633387
GO:0048534hemopoietic or lymphoid organ development0.0366462529633387
GO:0048518positive regulation of biological process0.0366462529633387
GO:0002520immune system development0.0426192840597251
GO:0060033anatomical structure regression0.0452589307795212
GO:0002513tolerance induction to self antigen0.0452589307795212
GO:0044271nitrogen compound biosynthetic process0.0455018767054064
GO:0007178transmembrane receptor protein serine/threonine kinase signaling pathway0.0459508849158139
GO:0007411axon guidance0.0459508849158139
GO:0005057receptor signaling protein activity0.0459508849158139
GO:0002507tolerance induction0.0459508849158139
GO:0009950dorsal/ventral axis specification0.0459508849158139
GO:0051138positive regulation of NK T cell differentiation0.0459508849158139
GO:0001865NK T cell differentiation0.0459508849158139
GO:0042416dopamine biosynthetic process0.0459508849158139
GO:0051136regulation of NK T cell differentiation0.0459508849158139
GO:0005102receptor binding0.0463596873818624
GO:0030098lymphocyte differentiation0.0495436465649074



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.18.67895e-16
MA0004.10.0917946
MA0006.10.00159497
MA0007.10.54351
MA0009.10.764824
MA0014.14.26554e-09
MA0017.10.324352
MA0019.10.068153
MA0024.10.0411792
MA0025.10.462204
MA0027.11.35421
MA0028.10.00052185
MA0029.10.14252
MA0030.10.617058
MA0031.10.534028
MA0038.10.317697
MA0040.10.209291
MA0041.12.17518
MA0042.10.943594
MA0043.10.295473
MA0046.10.860589
MA0048.10.0529708
MA0050.10.137346
MA0051.10.0282665
MA0052.10.216928
MA0055.10.618641
MA0056.10
MA0057.10.00379536
MA0058.10.260052
MA0059.10.585069
MA0060.10.0168846
MA0061.10.0361979
MA0063.10
MA0066.10.980434
MA0067.10.216053
MA0068.10.121225
MA0069.11.24467
MA0070.10.0569789
MA0071.11.32065
MA0072.10.200209
MA0073.13.00305e-07
MA0074.10.0504838
MA0076.10.000249394
MA0077.10.716051
MA0078.11.618
MA0081.10.248435
MA0083.10.294598
MA0084.11.15107
MA0087.11.36241
MA0088.10.00214259
MA0089.10
MA0090.10.203979
MA0091.10.892019
MA0092.10.204633
MA0093.10.0768182
MA0095.10
MA0098.10
MA0100.10.10724
MA0101.10.0712866
MA0103.10.843431
MA0105.10.0010283
MA0106.10.117677
MA0107.10.05164
MA0108.20.968116
MA0109.10
MA0111.10.234563
MA0113.10.364027
MA0114.10.309119
MA0115.10.0888396
MA0116.10.0130323
MA0117.10.0762761
MA0119.10.829526
MA0122.11.00364
MA0124.10.5414
MA0125.11.39665
MA0130.10
MA0131.10.0139461
MA0132.10
MA0133.10
MA0135.10.103037
MA0136.10.43295
MA0139.10.0129045
MA0140.11.33132
MA0141.10.785168
MA0142.10.803426
MA0143.11.59236
MA0144.11.47188
MA0145.10.00384124
MA0146.16.95703e-06
MA0147.10.0255945
MA0148.10.909235
MA0149.10.0148763
MA0062.23.44414e-07
MA0035.20.551467
MA0039.26.84356e-08
MA0138.20.0620487
MA0002.20.931425
MA0137.20.436658
MA0104.20.00507953
MA0047.20.316105
MA0112.20.480987
MA0065.20.122125
MA0150.11.83658
MA0151.10
MA0152.11.03069
MA0153.10.356563
MA0154.10.00621007
MA0155.10.00504177
MA0156.10.396742
MA0157.11.42868
MA0158.10
MA0159.10.0591091
MA0160.10.926126
MA0161.10
MA0162.14.80301e-10
MA0163.12.03122e-08
MA0164.10.906231
MA0080.20.628523
MA0018.20.0676199
MA0099.22.40819
MA0079.20
MA0102.20.497169
MA0258.12.78301
MA0259.10.000341309
MA0442.10
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