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Coexpression cluster:C80

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Full id: C80_immature_migratory_CD14_Dendritic_splenic_cord_Mast



Phase1 CAGE Peaks

Hg19::chr10:102793235..102793236,-p@chr10:102793235..102793236
-
Hg19::chr10:134040859..134040862,-p@chr10:134040859..134040862
-
Hg19::chr10:81032358..81032377,+p@chr10:81032358..81032377
+
Hg19::chr10:81695119..81695120,+p@chr10:81695119..81695120
+
Hg19::chr10:95326623..95326652,+p3@O3FAR1
Hg19::chr10:97149777..97149788,-p@chr10:97149777..97149788
-
Hg19::chr10:97149832..97149851,-p@chr10:97149832..97149851
-
Hg19::chr10:97457378..97457404,+p@chr10:97457378..97457404
+
Hg19::chr11:109958698..109958703,-p@chr11:109958698..109958703
-
Hg19::chr11:109958732..109958742,-p@chr11:109958732..109958742
-
Hg19::chr11:109958770..109958780,-p@chr11:109958770..109958780
-
Hg19::chr11:109959078..109959102,+p@chr11:109959078..109959102
+
Hg19::chr11:109959207..109959223,+p@chr11:109959207..109959223
+
Hg19::chr11:109959243..109959256,+p@chr11:109959243..109959256
+
Hg19::chr11:109959270..109959281,+p@chr11:109959270..109959281
+
Hg19::chr11:109963272..109963287,+p13@ZC3H12C
Hg19::chr11:109963681..109963715,+p5@ZC3H12C
Hg19::chr11:109963716..109963724,+p19@ZC3H12C
Hg19::chr11:117805926..117805937,+p@chr11:117805926..117805937
+
Hg19::chr11:12228326..12228332,+p@chr11:12228326..12228332
+
Hg19::chr11:12229172..12229186,+p9@MICAL2
Hg19::chr11:12263827..12263838,+p29@MICAL2
Hg19::chr11:12263846..12263853,+p43@MICAL2
Hg19::chr12:102174476..102174482,-p@chr12:102174476..102174482
-
Hg19::chr12:112590221..112590232,+p@chr12:112590221..112590232
+
Hg19::chr12:113573495..113573579,-p1@RASAL1
Hg19::chr12:113590909..113590922,+p4@CCDC42B
Hg19::chr12:122242766..122242781,+p8@SETD1B
Hg19::chr12:123205705..123205747,+p@chr12:123205705..123205747
+
Hg19::chr12:131576196..131576201,+p9@GPR133
Hg19::chr12:131590635..131590638,+p@chr12:131590635..131590638
+
Hg19::chr12:133005734..133005763,-p@chr12:133005734..133005763
-
Hg19::chr12:322510..322551,-p17@SLC6A12
Hg19::chr12:323920..323928,+p@chr12:323920..323928
+
Hg19::chr12:77314238..77314249,-p@chr12:77314238..77314249
-
Hg19::chr12:95211957..95211972,-p@chr12:95211957..95211972
-
Hg19::chr12:95264953..95264971,-p@chr12:95264953..95264971
-
Hg19::chr12:96649259..96649290,+p9@ELK3
Hg19::chr13:100018656..100018672,+p@chr13:100018656..100018672
+
Hg19::chr13:111855399..111855413,+p4@ARHGEF7
Hg19::chr13:111855414..111855417,+p21@ARHGEF7
Hg19::chr13:29315407..29315417,+p@chr13:29315407..29315417
+
Hg19::chr13:42969602..42969625,-p@chr13:42969602..42969625
-
Hg19::chr13:75873698..75873705,-p@chr13:75873698..75873705
-
Hg19::chr13:75873956..75873959,-p@chr13:75873956..75873959
-
Hg19::chr13:75884255..75884262,-p@chr13:75884255..75884262
-
Hg19::chr13:75884363..75884374,-p@chr13:75884363..75884374
-
Hg19::chr13:75884379..75884384,-p@chr13:75884379..75884384
-
Hg19::chr13:75884392..75884395,-p@chr13:75884392..75884395
-
Hg19::chr13:75884400..75884416,-p@chr13:75884400..75884416
-
Hg19::chr13:75884448..75884459,-p@chr13:75884448..75884459
-
Hg19::chr13:99959625..99959636,-p3@GPR183
Hg19::chr13:99959671..99959686,-p2@GPR183
Hg19::chr14:67878918..67878936,-p2@PLEK2
Hg19::chr14:67878948..67878953,-p4@PLEK2
Hg19::chr15:31696853..31696856,+p@chr15:31696853..31696856
+
Hg19::chr15:50411908..50411922,-p6@ATP8B4
Hg19::chr15:86125028..86125038,+p52@AKAP13
Hg19::chr15:86125058..86125067,+p69@AKAP13
Hg19::chr16:10960056..10960069,+p1@AB463580
Hg19::chr16:3647506..3647511,-p@chr16:3647506..3647511
-
Hg19::chr17:1576806..1576810,-p@chr17:1576806..1576810
-
Hg19::chr17:30002739..30002743,-p@chr17:30002739..30002743
-
Hg19::chr17:37880326..37880328,-p@chr17:37880326..37880328
-
Hg19::chr17:55693327..55693338,+p@chr17:55693327..55693338
+
Hg19::chr17:76136828..76136842,+p2@TMC8
Hg19::chr17:817943..817953,-p@chr17:817943..817953
-
Hg19::chr18:13611885..13611899,+p6@C18orf1
Hg19::chr18:13611909..13611923,+p10@C18orf1
Hg19::chr18:22537624..22537627,-p@chr18:22537624..22537627
-
Hg19::chr18:46523734..46523740,+p@chr18:46523734..46523740
+
Hg19::chr18:53545759..53545802,+p@chr18:53545759..53545802
+
Hg19::chr19:10515604..10515629,+p@chr19:10515604..10515629
+
Hg19::chr19:10531150..10531237,+p3@PDE4A
Hg19::chr19:2085219..2085230,-p10@MOB3A
Hg19::chr19:35481583..35481590,-p@chr19:35481583..35481590
-
Hg19::chr19:35485281..35485283,+p20@GRAMD1A
Hg19::chr19:35485440..35485460,+p13@GRAMD1A
Hg19::chr19:35485484..35485496,+p16@GRAMD1A
Hg19::chr19:36393258..36393271,+p6@HCST
Hg19::chr19:38085954..38085963,-p12@ZNF571
Hg19::chr19:51830316..51830333,+p@chr19:51830316..51830333
+
Hg19::chr19:59055602..59055605,+p17@TRIM28
Hg19::chr1:114448027..114448070,+p2@DCLRE1B
Hg19::chr1:117087402..117087404,+p@chr1:117087402..117087404
+
Hg19::chr1:157952996..157953024,+p@chr1:157952996..157953024
+
Hg19::chr1:158224204..158224231,+p1@CD1A
Hg19::chr1:158224254..158224274,+p5@CD1A
Hg19::chr1:158224278..158224289,+p9@CD1A
Hg19::chr1:183442432..183442460,+p@chr1:183442432..183442460
+
Hg19::chr1:192458942..192458949,-p@chr1:192458942..192458949
-
Hg19::chr1:192578585..192578597,+p@chr1:192578585..192578597
+
Hg19::chr1:19578116..19578131,+p4@MRTO4
Hg19::chr1:19578147..19578153,+p6@MRTO4
Hg19::chr1:201376546..201376550,+p@chr1:201376546..201376550
+
Hg19::chr1:206756587..206756605,+p8@RASSF5
Hg19::chr1:206756636..206756643,+p23@RASSF5
Hg19::chr1:206756646..206756652,+p21@RASSF5
Hg19::chr1:219632969..219632980,-p@chr1:219632969..219632980
-
Hg19::chr1:229182494..229182507,-p@chr1:229182494..229182507
-
Hg19::chr1:229182544..229182560,-p@chr1:229182544..229182560
-
Hg19::chr1:229182571..229182583,-p@chr1:229182571..229182583
-
Hg19::chr1:25291461..25291472,-p11@RUNX3
Hg19::chr1:25291475..25291511,-p2@RUNX3
Hg19::chr1:42619540..42619567,+p@chr1:42619540..42619567
+
Hg19::chr1:6341268..6341339,-p@chr1:6341268..6341339
-
Hg19::chr1:762210..762220,+p@chr1:762210..762220
+
Hg19::chr1:763094..763106,+p1@ENST00000416570
Hg19::chr1:85462749..85462760,-p3@MCOLN2
Hg19::chr1:85462762..85462804,-p1@MCOLN2
Hg19::chr1:85462813..85462824,-p2@MCOLN2
Hg19::chr20:44639404..44639426,+p@chr20:44639404..44639426
+
Hg19::chr20:44639498..44639509,+p@chr20:44639498..44639509
+
Hg19::chr20:44639714..44639732,+p@chr20:44639714..44639732
+
Hg19::chr20:44639733..44639737,+p@chr20:44639733..44639737
+
Hg19::chr20:44640603..44640610,+p8@MMP9
Hg19::chr20:44640676..44640696,+p6@MMP9
Hg19::chr20:44640717..44640734,+p5@MMP9
Hg19::chr20:62482031..62482052,-p@chr20:62482031..62482052
-
Hg19::chr21:19165749..19165765,+p2@CHODL
Hg19::chr21:46285621..46285636,-p12@PTTG1IP
Hg19::chr22:37260997..37261033,+p@chr22:37260997..37261033
+
Hg19::chr22:43366166..43366179,-p@chr22:43366166..43366179
-
Hg19::chr2:102758751..102758779,+p15@IL1R1
Hg19::chr2:102760015..102760032,+p1@CR936696
Hg19::chr2:102803477..102803511,+p1@IL1RL2
Hg19::chr2:128146426..128146444,+p2@ENST00000433673
Hg19::chr2:128146510..128146519,+p4@ENST00000433673
Hg19::chr2:128405655..128405692,+p5@GPR17
Hg19::chr2:128408404..128408428,-p34@LIMS2
Hg19::chr2:135532029..135532035,-p@chr2:135532029..135532035
-
Hg19::chr2:135821386..135821432,+p@chr2:135821386..135821432
+
Hg19::chr2:191756900..191756912,+p@chr2:191756900..191756912
+
Hg19::chr2:201997651..201997669,+p39@CFLAR
Hg19::chr2:201997681..201997696,+p31@CFLAR
Hg19::chr2:204398121..204398132,-p18@RAPH1
Hg19::chr2:204398141..204398180,-p7@RAPH1
Hg19::chr2:235214861..235214870,+p@chr2:235214861..235214870
+
Hg19::chr2:235217777..235217792,+p@chr2:235217777..235217792
+
Hg19::chr2:235218388..235218394,+p@chr2:235218388..235218394
+
Hg19::chr2:235311862..235311891,-p@chr2:235311862..235311891
-
Hg19::chr2:235312015..235312040,+p@chr2:235312015..235312040
+
Hg19::chr2:238807387..238807393,-p@chr2:238807387..238807393
-
Hg19::chr2:242169465..242169480,-p68@HDLBP
Hg19::chr2:242169538..242169541,-p71@HDLBP
Hg19::chr2:2725835..2725840,-p@chr2:2725835..2725840
-
Hg19::chr2:61081135..61081167,+p@chr2:61081135..61081167
+
Hg19::chr2:61108878..61108891,+p5@REL
Hg19::chr2:61110552..61110562,+p@chr2:61110552..61110562
+
Hg19::chr2:64552666..64552692,-p@chr2:64552666..64552692
-
Hg19::chr2:65593758..65593771,-p9@SPRED2
Hg19::chr2:65593786..65593817,-p8@SPRED2
Hg19::chr2:70780545..70780558,-p4@TGFA
Hg19::chr2:70780572..70780583,-p6@TGFA
Hg19::chr2:71056916..71056934,+p@chr2:71056916..71056934
+
Hg19::chr2:71062938..71062952,-p1@CD207
Hg19::chr2:8724165..8724187,+p@chr2:8724165..8724187
+
Hg19::chr2:8724189..8724204,+p@chr2:8724189..8724204
+
Hg19::chr3:119182394..119182405,-p9@TMEM39A
Hg19::chr3:119188104..119188112,-p15@TMEM39A
Hg19::chr3:119188119..119188129,-p18@TMEM39A
Hg19::chr3:119188142..119188154,-p6@TMEM39A
Hg19::chr3:197687656..197687667,+p@chr3:197687656..197687667
+
Hg19::chr3:5068581..5068590,+p@chr3:5068581..5068590
+
Hg19::chr3:7961529..7961534,-p@chr3:7961529..7961534
-
Hg19::chr3:7961538..7961548,-p@chr3:7961538..7961548
-
Hg19::chr4:100737885..100737901,+p2@DAPP1
Hg19::chr4:103514596..103514605,+p44@NFKB1
Hg19::chr4:103514644..103514652,+p45@NFKB1
Hg19::chr4:148605150..148605161,-p5@PRMT10
Hg19::chr4:148605163..148605168,-p9@PRMT10
Hg19::chr4:148605177..148605178,-p10@PRMT10
Hg19::chr4:148605203..148605214,-p7@PRMT10
Hg19::chr4:148605219..148605264,-p2@PRMT10
Hg19::chr4:152330409..152330416,+p5@FAM160A1
Hg19::chr4:3372015..3372020,+p33@RGS12
Hg19::chr4:84457529..84457541,+p8@AGPAT9
Hg19::chr4:84457628..84457666,+p3@AGPAT9
Hg19::chr4:84495829..84495833,+p@chr4:84495829..84495833
+
Hg19::chr5:125695881..125695907,+p18@GRAMD3
Hg19::chr5:125695908..125695916,+p38@GRAMD3
Hg19::chr5:125695985..125695996,+p19@GRAMD3
Hg19::chr5:146381093..146381133,+p@chr5:146381093..146381133
+
Hg19::chr5:14664896..14664901,+p12@FAM105B
Hg19::chr5:14664913..14664916,+p10@FAM105B
Hg19::chr5:14664971..14664983,+p7@FAM105B
Hg19::chr5:14668684..14668705,+p@chr5:14668684..14668705
+
Hg19::chr5:14993035..14993045,+p@chr5:14993035..14993045
+
Hg19::chr5:446253..446280,+p4@EXOC3
Hg19::chr6:10529918..10529924,+p31@GCNT2
Hg19::chr6:10529946..10529970,+p7@GCNT2
Hg19::chr6:10529983..10530000,+p13@GCNT2
Hg19::chr6:116989837..116989843,-p2@ZUFSP
Hg19::chr6:123038689..123038700,+p8@PKIB
Hg19::chr6:149806523..149806601,-p3@ZC3H12D
Hg19::chr6:16700759..16700768,-p@chr6:16700759..16700768
-
Hg19::chr6:167536616..167536629,+p7@CCR6
Hg19::chr6:169588737..169588744,-p@chr6:169588737..169588744
-
Hg19::chr6:169770365..169770377,-p@chr6:169770365..169770377
-
Hg19::chr6:32726761..32726781,-p@chr6:32726761..32726781
-
Hg19::chr6:32729529..32729536,-p3@M95729
Hg19::chr6:32731284..32731295,-p2@HLA-DQB2
Hg19::chr6:32731299..32731316,-p1@HLA-DQB2
Hg19::chr6:32731327..32731340,-p3@HLA-DQB2
Hg19::chr6:32782930..32782943,-p@chr6:32782930..32782943
-
Hg19::chr6:33041605..33041651,-p9@HLA-DPA1
Hg19::chr6:33084930..33084937,+p@chr6:33084930..33084937
+
Hg19::chr6:4337610..4337616,+p@chr6:4337610..4337616
+
Hg19::chr6:4778354..4778387,-p@chr6:4778354..4778387
-
Hg19::chr6:6841284..6841289,+p@chr6:6841284..6841289
+
Hg19::chr7:106681868..106681884,+p@chr7:106681868..106681884
+
Hg19::chr7:111726607..111726620,-p@chr7:111726607..111726620
-
Hg19::chr7:111726632..111726641,-p@chr7:111726632..111726641
-
Hg19::chr7:151182048..151182088,-p@chr7:151182048..151182088
-
Hg19::chr7:20345503..20345510,+p1@ENST00000455373
Hg19::chr7:20346998..20347015,+p@chr7:20346998..20347015
+
Hg19::chr7:20479783..20479785,-p@chr7:20479783..20479785
-
Hg19::chr7:45025791..45025805,-p3@SNHG15
Hg19::chr7:45025815..45025835,-p5@SNHG15
Hg19::chr7:73985353..73985386,+p@chr7:73985353..73985386
+
Hg19::chr8:118169907..118169924,+p@chr8:118169907..118169924
+
Hg19::chr8:120974832..120974840,+p@chr8:120974832..120974840
+
Hg19::chr8:144261092..144261101,-p@chr8:144261092..144261101
-
Hg19::chr8:21039080..21039110,+p@chr8:21039080..21039110
+
Hg19::chr8:39806500..39806509,+p7@IDO2
Hg19::chr8:39806514..39806522,+p3@IDO2
Hg19::chr9:124260983..124260993,-p@chr9:124260983..124260993
-
Hg19::chr9:134505689..134505701,-p@chr9:134505689..134505701
-
Hg19::chr9:134505710..134505715,-p@chr9:134505710..134505715
-
Hg19::chr9:137277968..137277982,+p@chr9:137277968..137277982
+
Hg19::chr9:140565510..140565515,-p@chr9:140565510..140565515
-
Hg19::chr9:16130228..16130236,+p@chr9:16130228..16130236
+
Hg19::chr9:72874205..72874219,-p2@LOC100507299
Hg19::chr9:8384123..8384141,-p@chr9:8384123..8384141
-
Hg19::chr9:8384143..8384151,-p@chr9:8384143..8384151
-
Hg19::chr9:8384168..8384183,-p@chr9:8384168..8384183
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

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