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Coexpression cluster:C176

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Full id: C176_Eosinophils_Neutrophils_Mast_CD14_CD4_Basophils_CD19



Phase1 CAGE Peaks

Hg19::chr10:124768300..124768334,-p1@IKZF5
Hg19::chr10:28821674..28821715,+p2@WAC
Hg19::chr10:32636106..32636150,-p3@EPC1
Hg19::chr10:69644404..69644425,+p1@SIRT1
Hg19::chr10:76586348..76586366,+p1@KAT6B
Hg19::chr10:98592009..98592061,+p1@C10orf12
p1@LCOR
Hg19::chr11:118661828..118661886,-p1@DDX6
Hg19::chr11:13299319..13299424,+p1@ARNTL
Hg19::chr11:65265141..65265306,+p4@MALAT1
Hg19::chr11:9482551..9482580,+p1@ZNF143
Hg19::chr12:132195617..132195648,+p1@SFSWAP
Hg19::chr12:46384334..46384366,-p1@SCAF11
Hg19::chr12:498415..498492,-p1@KDM5A
Hg19::chr12:72057607..72057636,-p1@ZFC3H1
Hg19::chr12:72057639..72057678,-p2@ZFC3H1
Hg19::chr12:76953542..76953561,-p1@OSBPL8
Hg19::chr13:108870714..108870780,+p2@ABHD13
Hg19::chr13:28712299..28712376,+p1@PAN3
Hg19::chr13:41557016..41557041,-p@chr13:41557016..41557041
-
Hg19::chr14:50319482..50319564,-p1@NEMF
Hg19::chr14:58765217..58765301,+p1@ARID4A
Hg19::chr14:70233822..70233868,+p1@SRSF5
Hg19::chr14:73525229..73525260,+p1@RBM25
Hg19::chr15:50716576..50716624,+p1@USP8
Hg19::chr15:68346646..68346665,+p1@PIAS1
Hg19::chr15:72766651..72766680,+p1@ARIH1
Hg19::chr16:3930681..3930721,-p1@CREBBP
Hg19::chr16:9185450..9185516,+p1@C16orf72
Hg19::chr17:29641057..29641079,-p1@EVI2B
Hg19::chr17:34900745..34900821,+p1@GGNBP2
Hg19::chr17:42264322..42264376,+p2@TMUB2
Hg19::chr17:62502399..62502411,-p1@DDX5
Hg19::chr17:7737518..7737579,+p@chr17:7737518..7737579
+
Hg19::chr18:19180606..19180673,-p1@ESCO1
Hg19::chr18:60190226..60190314,+p1@ZCCHC2
Hg19::chr18:72265084..72265143,+p1@ZNF407
Hg19::chr18:9136763..9136852,+p1@ANKRD12
Hg19::chr19:52490043..52490113,-p1@ZNF350
Hg19::chr1:109289279..109289331,+p1@STXBP3
Hg19::chr1:14075903..14075940,+p1@PRDM2
Hg19::chr1:1655723..1655803,-p1@CDK11A
p1@CDK11B
Hg19::chr1:173991434..173991556,-p1@RC3H1
Hg19::chr1:226187013..226187071,-p1@C1orf55
Hg19::chr1:231473578..231473619,-p1@EXOC8
Hg19::chr1:235491462..235491510,-p1@ARID4B
Hg19::chr1:40627038..40627071,+p1@RLF
Hg19::chr1:67395922..67395976,+p2@MIER1
Hg19::chr1:89458415..89458463,-p1@RBMXL1
p2@CCBL2
Hg19::chr20:34330129..34330195,-p1@RBM39
Hg19::chr21:34915337..34915397,+p1@SON
Hg19::chr21:38739111..38739164,+p3@DYRK1A
Hg19::chr21:43430440..43430485,-p1@ZNF295
Hg19::chr22:39101927..39101990,+p1@GTPBP1
Hg19::chr22:41487711..41487798,+p1@EP300
Hg19::chr2:109065634..109065692,+p1@GCC2
Hg19::chr2:109335929..109336002,+p1@RANBP2
Hg19::chr2:136499179..136499228,+p3@UBXN4
Hg19::chr2:149402275..149402341,+p1@EPC2
Hg19::chr2:160568978..160569064,+p1@MARCH7
Hg19::chr2:198299726..198299776,-p1@SF3B1
Hg19::chr2:48133576..48133693,-p@chr2:48133576..48133693
-
Hg19::chr2:86668464..86668529,+p1@KDM3A
Hg19::chr3:135915086..135915144,-p2@MSL2
Hg19::chr3:14693235..14693246,+p3@C3orf19
Hg19::chr3:156877955..156877974,-p2@CCNL1
Hg19::chr3:156877978..156877987,-p3@CCNL1
Hg19::chr3:38206975..38207101,+p1@OXSR1
Hg19::chr3:53381539..53381577,-p1@DCP1A
Hg19::chr3:69101413..69101457,-p1@TMF1
Hg19::chr4:69215699..69215815,-p1@YTHDC1
Hg19::chr5:130970848..130970965,-p1@RAPGEF6
Hg19::chr5:137368726..137368784,-p1@FAM13B
Hg19::chr5:139781393..139781435,+p1@ANKHD1-EIF4EBP3
p1@ANKHD1
Hg19::chr5:142784003..142784065,-p2@NR3C1
Hg19::chr5:172483347..172483407,+p1@C5orf41
Hg19::chr5:176433693..176433812,-p1@UIMC1
Hg19::chr5:36876833..36876894,+p2@NIPBL
Hg19::chr5:36876926..36876994,+p1@NIPBL
Hg19::chr5:39074479..39074515,-p1@RICTOR
Hg19::chr5:56469958..56469966,+p8@GPBP1
Hg19::chr5:86708636..86708665,-p2@CCNH
Hg19::chr5:86708670..86708766,-p1@CCNH
Hg19::chr5:98264581..98264689,-p@chr5:98264581..98264689
-
Hg19::chr6:139456200..139456225,+p2@HECA
Hg19::chr6:155054530..155054561,+p1@SCAF8
Hg19::chr6:160148525..160148576,+p1@WTAP
Hg19::chr6:33378517..33378564,+p3@PHF1
Hg19::chr6:42749679..42749713,+p3@KIAA0240
Hg19::chr6:87865262..87865311,+p1@ZNF292
Hg19::chr7:104653471..104653515,-p1@ENST00000445184
p1@ENST00000450686
Hg19::chr7:104654623..104654669,+p1@MLL5
Hg19::chr7:130792893..130792908,-p2@ENST00000429901
Hg19::chr7:152133620..152133652,-p@chr7:152133620..152133652
-
Hg19::chr7:155437341..155437405,+p1@RBM33
Hg19::chr8:41909496..41909512,-p1@KAT6A
Hg19::chr8:68256003..68256034,-p1@ARFGEF1
Hg19::chr9:135230336..135230398,-p1@SETX
Hg19::chrX:123094564..123094581,+p5@STAG2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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