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Coexpression cluster:C60

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Full id: C60_esophagus_tonsil_throat_tongue_uterus_cervix_cervical



Phase1 CAGE Peaks

Hg19::chr10:105495808..105495820,-p@chr10:105495808..105495820
-
Hg19::chr10:105495838..105495848,-p@chr10:105495838..105495848
-
Hg19::chr10:105495850..105495876,-p@chr10:105495850..105495876
-
Hg19::chr10:116275541..116275544,+p@chr10:116275541..116275544
+
Hg19::chr10:116392937..116392954,-p@chr10:116392937..116392954
-
Hg19::chr10:75413258..75413290,-p@chr10:75413258..75413290
-
Hg19::chr10:75423560..75423562,-p@chr10:75423560..75423562
-
Hg19::chr11:18548254..18548281,-p@chr11:18548254..18548281
-
Hg19::chr11:67786884..67786893,+p2@AK129943
Hg19::chr11:698049..698054,-p@chr11:698049..698054
-
Hg19::chr11:8795787..8795804,-p26@ST5
Hg19::chr12:106691707..106691726,+p@chr12:106691707..106691726
+
Hg19::chr12:123187512..123187523,-p2@HCAR2
Hg19::chr12:31397380..31397386,+p@chr12:31397380..31397386
+
Hg19::chr12:48119266..48119279,-p1@ENDOU
Hg19::chr12:53200456..53200478,+p2@CU692075
Hg19::chr12:53200490..53200511,+p3@CU692075
Hg19::chr12:53200523..53200541,-p@chr12:53200523..53200541
-
Hg19::chr12:53200600..53200613,-p@chr12:53200600..53200613
-
Hg19::chr12:53200658..53200668,-p@chr12:53200658..53200668
-
Hg19::chr12:53200675..53200684,-p@chr12:53200675..53200684
-
Hg19::chr12:53200712..53200723,-p@chr12:53200712..53200723
-
Hg19::chr12:53200731..53200762,-p@chr12:53200731..53200762
-
Hg19::chr12:53200787..53200801,-p@chr12:53200787..53200801
-
Hg19::chr12:53200837..53200852,-p@chr12:53200837..53200852
-
Hg19::chr12:53200913..53200924,-p@chr12:53200913..53200924
-
Hg19::chr12:53200931..53200932,-p@chr12:53200931..53200932
-
Hg19::chr12:53200945..53200976,-p@chr12:53200945..53200976
-
Hg19::chr12:53200984..53200997,-p@chr12:53200984..53200997
-
Hg19::chr12:53201166..53201188,-p@chr12:53201166..53201188
-
Hg19::chr12:53201485..53201493,-p15@KRT4
Hg19::chr12:53201498..53201514,-p5@KRT4
Hg19::chr12:53201516..53201527,-p8@KRT4
Hg19::chr12:53201551..53201566,+p@chr12:53201551..53201566
+
Hg19::chr12:53201553..53201562,-p11@KRT4
Hg19::chr12:53201566..53201575,-p13@KRT4
Hg19::chr12:53201596..53201607,-p7@KRT4
Hg19::chr12:53201621..53201631,-p14@KRT4
Hg19::chr12:53201644..53201647,-p18@KRT4
Hg19::chr12:53202108..53202119,+p@chr12:53202108..53202119
+
Hg19::chr12:53202541..53202544,-p@chr12:53202541..53202544
-
Hg19::chr12:53203208..53203216,-p@chr12:53203208..53203216
-
Hg19::chr12:53203220..53203235,-p@chr12:53203220..53203235
-
Hg19::chr12:53203254..53203265,-p@chr12:53203254..53203265
-
Hg19::chr12:53204539..53204571,+p@chr12:53204539..53204571
+
Hg19::chr12:53205597..53205606,-p9@KRT4
Hg19::chr12:53205625..53205638,-p6@KRT4
Hg19::chr12:53205652..53205684,-p2@KRT4
Hg19::chr12:53205697..53205705,-p10@KRT4
Hg19::chr12:53205714..53205729,-p3@KRT4
Hg19::chr12:53207890..53207907,-p1@KRT4
Hg19::chr12:53232854..53232870,-p@chr12:53232854..53232870
-
Hg19::chr12:53242592..53242631,-p4@KRT78
Hg19::chr12:53242770..53242783,-p1@KRT78
Hg19::chr12:53673418..53673427,+p9@ESPL1
Hg19::chr12:8995874..8995875,+p26@A2ML1
Hg19::chr12:9008112..9008120,+p25@A2ML1
Hg19::chr12:9010623..9010637,+p@chr12:9010623..9010637
+
Hg19::chr12:970331..970378,+p@chr12:970331..970378
+
Hg19::chr13:78146259..78146282,+p@chr13:78146259..78146282
+
Hg19::chr14:104571241..104571260,+p2@ASPG
Hg19::chr14:104571289..104571302,+p4@ASPG
Hg19::chr14:80697396..80697402,-p25@DIO2
Hg19::chr15:90030177..90030186,-p@chr15:90030177..90030186
-
Hg19::chr15:90030191..90030200,-p@chr15:90030191..90030200
-
Hg19::chr15:90039805..90039821,-p1@RHCG
Hg19::chr15:90744026..90744037,+p@chr15:90744026..90744037
+
Hg19::chr16:2764156..2764203,-p@chr16:2764156..2764203
-
Hg19::chr16:2770218..2770233,-p1@PRSS27
Hg19::chr16:70602928..70602938,+p@chr16:70602928..70602938
+
Hg19::chr17:39657263..39657336,-p@chr17:39657263..39657336
-
Hg19::chr17:39657351..39657375,-p@chr17:39657351..39657375
-
Hg19::chr17:39657377..39657402,-p@chr17:39657377..39657402
-
Hg19::chr17:39657420..39657432,-p@chr17:39657420..39657432
-
Hg19::chr17:39657472..39657506,-p@chr17:39657472..39657506
-
Hg19::chr17:39657509..39657542,-p@chr17:39657509..39657542
-
Hg19::chr17:39657536..39657564,+p1@ENST00000411759
Hg19::chr17:39657548..39657549,-p@chr17:39657548..39657549
-
Hg19::chr17:39657551..39657567,-p@chr17:39657551..39657567
-
Hg19::chr17:39657569..39657633,-p@chr17:39657569..39657633
-
Hg19::chr17:39657991..39658003,-p@chr17:39657991..39658003
-
Hg19::chr17:39658661..39658672,-p11@KRT13
Hg19::chr17:39658702..39658710,-p@chr17:39658702..39658710
-
Hg19::chr17:39658723..39658735,-p@chr17:39658723..39658735
-
Hg19::chr17:39658749..39658760,-p@chr17:39658749..39658760
-
Hg19::chr17:39658766..39658788,-p@chr17:39658766..39658788
-
Hg19::chr17:39658800..39658850,-p@chr17:39658800..39658850
-
Hg19::chr17:39658980..39659009,-p6@KRT13
Hg19::chr17:39658981..39659006,+p@chr17:39658981..39659006
+
Hg19::chr17:39659014..39659027,-p14@KRT13
Hg19::chr17:39659035..39659056,-p5@KRT13
Hg19::chr17:39659217..39659230,+p@chr17:39659217..39659230
+
Hg19::chr17:39659222..39659229,-p17@KRT13
Hg19::chr17:39659243..39659248,+p@chr17:39659243..39659248
+
Hg19::chr17:39659244..39659257,-p13@KRT13
Hg19::chr17:39659278..39659313,-p4@KRT13
Hg19::chr17:39659308..39659326,+p@chr17:39659308..39659326
+
Hg19::chr17:39659317..39659328,-p8@KRT13
Hg19::chr17:39659331..39659336,-p20@KRT13
Hg19::chr17:39659343..39659346,-p21@KRT13
Hg19::chr17:39659525..39659561,+p@chr17:39659525..39659561
+
Hg19::chr17:39659613..39659636,-p1@BC113044
Hg19::chr17:39659639..39659661,-p2@BC113044
Hg19::chr17:39659676..39659686,-p3@BC113044
Hg19::chr17:39659950..39659962,-p@chr17:39659950..39659962
-
Hg19::chr17:39659966..39659969,-p@chr17:39659966..39659969
-
Hg19::chr17:39659970..39659987,-p@chr17:39659970..39659987
-
Hg19::chr17:39660121..39660123,-p@chr17:39660121..39660123
-
Hg19::chr17:39661305..39661336,+p@chr17:39661305..39661336
+
Hg19::chr17:39661344..39661349,+p@chr17:39661344..39661349
+
Hg19::chr17:39661355..39661374,+p@chr17:39661355..39661374
+
Hg19::chr17:39661426..39661441,+p@chr17:39661426..39661441
+
Hg19::chr17:39661463..39661479,+p@chr17:39661463..39661479
+
Hg19::chr17:39661541..39661564,+p@chr17:39661541..39661564
+
Hg19::chr17:39661856..39661871,-p1@KRT13
Hg19::chr17:39662000..39662010,-p16@KRT13
Hg19::chr17:39667678..39667684,+p@chr17:39667678..39667684
+
Hg19::chr18:28682080..28682106,-p3@DSC2
Hg19::chr18:29006845..29006854,-p@chr18:29006845..29006854
-
Hg19::chr18:29006862..29006869,-p@chr18:29006862..29006869
-
Hg19::chr18:29006875..29006888,-p@chr18:29006875..29006888
-
Hg19::chr18:29006892..29006902,-p@chr18:29006892..29006902
-
Hg19::chr18:43744952..43744955,+p@chr18:43744952..43744955
+
Hg19::chr18:52051834..52051848,+p@chr18:52051834..52051848
+
Hg19::chr18:52259392..52259401,+p@chr18:52259392..52259401
+
Hg19::chr18:52259406..52259421,+p@chr18:52259406..52259421
+
Hg19::chr19:15343153..15343164,-p7@EPHX3
Hg19::chr19:42893148..42893167,-p@chr19:42893148..42893167
-
Hg19::chr19:42894136..42894138,-p@chr19:42894136..42894138
-
Hg19::chr19:42894442..42894451,-p1@CNFN
Hg19::chr19:51538150..51538203,-p1@KLK12
Hg19::chr19:51538247..51538275,-p2@KLK12
Hg19::chr19:51563263..51563273,+p@chr19:51563263..51563273
+
Hg19::chr19:51563274..51563287,-p@chr19:51563274..51563287
-
Hg19::chr19:51568337..51568363,-p1@KLK13
Hg19::chr19:51568929..51568943,-p@chr19:51568929..51568943
-
Hg19::chr19:51845411..51845412,-p10@VSIG10L
Hg19::chr19:55587751..55587772,+p3@EPS8L1
Hg19::chr19:58907015..58907033,+p1@LOC646862
Hg19::chr1:116666751..116666755,+p@chr1:116666751..116666755
+
Hg19::chr1:118570948..118570964,-p@chr1:118570948..118570964
-
Hg19::chr1:118570971..118570976,-p@chr1:118570971..118570976
-
Hg19::chr1:150482616..150482631,+p@chr1:150482616..150482631
+
Hg19::chr1:152382640..152382645,+p@chr1:152382640..152382645
+
Hg19::chr1:152382654..152382683,+p@chr1:152382654..152382683
+
Hg19::chr1:152382675..152382686,-p@chr1:152382675..152382686
-
Hg19::chr1:152382699..152382707,-p@chr1:152382699..152382707
-
Hg19::chr1:152382751..152382765,+p@chr1:152382751..152382765
+
Hg19::chr1:152382766..152382801,+p@chr1:152382766..152382801
+
Hg19::chr1:152382773..152382786,-p@chr1:152382773..152382786
-
Hg19::chr1:152382802..152382810,-p@chr1:152382802..152382810
-
Hg19::chr1:152382819..152382833,-p@chr1:152382819..152382833
-
Hg19::chr1:152382880..152382889,-p@chr1:152382880..152382889
-
Hg19::chr1:152382896..152382914,+p@chr1:152382896..152382914
+
Hg19::chr1:152382906..152382915,-p@chr1:152382906..152382915
-
Hg19::chr1:152382918..152382945,+p@chr1:152382918..152382945
+
Hg19::chr1:152382929..152382940,-p@chr1:152382929..152382940
-
Hg19::chr1:152382953..152382966,-p@chr1:152382953..152382966
-
Hg19::chr1:152382982..152382997,-p@chr1:152382982..152382997
-
Hg19::chr1:152383005..152383010,-p@chr1:152383005..152383010
-
Hg19::chr1:152383022..152383031,-p@chr1:152383022..152383031
-
Hg19::chr1:152383048..152383058,-p@chr1:152383048..152383058
-
Hg19::chr1:152383063..152383073,-p@chr1:152383063..152383073
-
Hg19::chr1:152383078..152383092,-p@chr1:152383078..152383092
-
Hg19::chr1:152383096..152383106,-p@chr1:152383096..152383106
-
Hg19::chr1:152383121..152383144,+p@chr1:152383121..152383144
+
Hg19::chr1:152383149..152383161,-p@chr1:152383149..152383161
-
Hg19::chr1:152383167..152383181,-p@chr1:152383167..152383181
-
Hg19::chr1:152383211..152383220,-p@chr1:152383211..152383220
-
Hg19::chr1:152383226..152383237,-p@chr1:152383226..152383237
-
Hg19::chr1:152384638..152384647,-p1@CU689016
Hg19::chr1:152384720..152384731,-p3@CU689016
Hg19::chr1:152386732..152386745,-p1@CRNN
Hg19::chr1:152386747..152386752,-p2@CRNN
Hg19::chr1:152486950..152486964,+p1@CRCT1
Hg19::chr1:152487957..152487969,+p3@CRCT1
Hg19::chr1:152957724..152957751,+p2@SPRR1A
Hg19::chr1:152957764..152957775,+p3@SPRR1A
Hg19::chr1:152974218..152974231,+p1@SPRR3
Hg19::chr1:152975474..152975485,+p2@SPRR3
Hg19::chr1:152975488..152975498,+p4@SPRR3
Hg19::chr1:152975503..152975534,+p1@AB587575
Hg19::chr1:152975514..152975535,-p@chr1:152975514..152975535
-
Hg19::chr1:152975538..152975551,-p@chr1:152975538..152975551
-
Hg19::chr1:152975544..152975565,+p2@AB587575
Hg19::chr1:152975555..152975563,-p@chr1:152975555..152975563
-
Hg19::chr1:152975569..152975582,-p@chr1:152975569..152975582
-
Hg19::chr1:152975585..152975590,+p12@AB587575
Hg19::chr1:152975590..152975603,-p@chr1:152975590..152975603
-
Hg19::chr1:152975595..152975603,+p8@AB587575
Hg19::chr1:152975604..152975615,-p@chr1:152975604..152975615
-
Hg19::chr1:152975608..152975618,+p7@AB587575
Hg19::chr1:152975620..152975629,+p13@AB587575
Hg19::chr1:152975785..152975794,+p14@AB587575
Hg19::chr1:152975795..152975798,+p22@AB587575
Hg19::chr1:152975802..152975809,+p15@AB587575
Hg19::chr1:152975812..152975817,+p19@AB587575
Hg19::chr1:152975830..152975844,+p4@AB587575
Hg19::chr1:152975850..152975863,+p10@AB587575
Hg19::chr1:152975869..152975876,+p20@AB587575
Hg19::chr1:152975877..152975880,+p21@AB587575
Hg19::chr1:152975882..152975894,+p6@AB587575
Hg19::chr1:152975907..152975917,+p9@AB587575
Hg19::chr1:152975931..152975938,+p16@AB587575
Hg19::chr1:152975940..152975958,+p5@AB587575
Hg19::chr1:152975963..152975973,+p11@AB587575
Hg19::chr1:152975970..152975992,-p@chr1:152975970..152975992
-
Hg19::chr1:152975982..152975994,+p3@AB587575
Hg19::chr1:152975995..152976022,-p@chr1:152975995..152976022
-
Hg19::chr1:152976011..152976017,+p@chr1:152976011..152976017
+
Hg19::chr1:152976023..152976067,+p@chr1:152976023..152976067
+
Hg19::chr1:152976024..152976042,-p@chr1:152976024..152976042
-
Hg19::chr1:152976078..152976087,+p@chr1:152976078..152976087
+
Hg19::chr1:152976098..152976136,+p@chr1:152976098..152976136
+
Hg19::chr1:152976108..152976135,-p@chr1:152976108..152976135
-
Hg19::chr1:152976174..152976177,-p@chr1:152976174..152976177
-
Hg19::chr1:152976196..152976209,-p@chr1:152976196..152976209
-
Hg19::chr1:152976212..152976222,+p@chr1:152976212..152976222
+
Hg19::chr1:152976237..152976250,+p@chr1:152976237..152976250
+
Hg19::chr1:153333355..153333369,+p@chr1:153333355..153333369
+
Hg19::chr1:154141847..154141857,-p@chr1:154141847..154141857
-
Hg19::chr1:55266926..55266958,-p2@TTC22
Hg19::chr1:55272540..55272552,+p@chr1:55272540..55272552
+
Hg19::chr1:82165287..82165302,+p12@LPHN2
Hg19::chr1:87012691..87012711,+p6@CLCA4
Hg19::chr1:87012753..87012767,+p1@CLCA4
Hg19::chr1:89829517..89829537,+p3@GBP6
Hg19::chr1:89829610..89829627,+p1@GBP6
Hg19::chr1:9937997..9938010,-p@chr1:9937997..9938010
-
Hg19::chr1:9938028..9938048,-p@chr1:9938028..9938048
-
Hg19::chr20:2276639..2276656,+p1@TGM3
Hg19::chr20:46821059..46821069,+p@chr20:46821059..46821069
+
Hg19::chr22:46771050..46771059,-p@chr22:46771050..46771059
-
Hg19::chr2:113763031..113763038,+p1@IL36A
Hg19::chr2:113875512..113875560,+p2@IL1RN
Hg19::chr2:178179611..178179619,-p4@ENST00000443132
Hg19::chr2:178179636..178179647,-p3@ENST00000443132
Hg19::chr2:234590530..234590553,+p1@UGT1A7
Hg19::chr2:234590556..234590568,+p2@UGT1A7
Hg19::chr2:241835561..241835575,-p1@C2orf54
Hg19::chr2:26350051..26350063,+p@chr2:26350051..26350063
+
Hg19::chr2:31440377..31440385,-p1@CAPN14
Hg19::chr2:31472137..31472163,+p@chr2:31472137..31472163
+
Hg19::chr2:95691445..95691461,+p1@MAL
Hg19::chr2:95713709..95713720,+p@chr2:95713709..95713720
+
Hg19::chr2:95719121..95719138,+p@chr2:95719121..95719138
+
Hg19::chr2:95719226..95719249,+p@chr2:95719226..95719249
+
Hg19::chr2:95719400..95719411,+p@chr2:95719400..95719411
+
Hg19::chr2:97711854..97711859,+p1@ENST00000450846
Hg19::chr3:124535316..124535340,+p@chr3:124535316..124535340
+
Hg19::chr3:159756844..159756848,-p@chr3:159756844..159756848
-
Hg19::chr3:195542563..195542578,+p@chr3:195542563..195542578
+
Hg19::chr3:197273574..197273608,-p1@AB528556
Hg19::chr3:259245..259270,+p19@CHL1
Hg19::chr4:100356431..100356446,-p3@ADH7
Hg19::chr4:100356453..100356521,-p1@ADH7
Hg19::chr4:100356522..100356531,-p5@ADH7
Hg19::chr4:100356551..100356570,-p2@ADH7
Hg19::chr4:68829159..68829224,-p1@TMPRSS11A
Hg19::chr4:68829226..68829237,-p3@TMPRSS11A
Hg19::chr4:68829248..68829263,-p2@TMPRSS11A
Hg19::chr4:69083720..69083737,-p1@ENST00000504453
p1@ENST00000511720
Hg19::chr4:69111401..69111418,-p1@TMPRSS11B
Hg19::chr4:69313171..69313194,+p1@TMPRSS11E
Hg19::chr5:134375398..134375414,-p2@ENST00000511256
Hg19::chr5:134375415..134375475,-p1@ENST00000511256
Hg19::chr5:147443534..147443551,+p1@SPINK5
Hg19::chr5:147466003..147466018,+p7@SPINK5
Hg19::chr5:147491402..147491420,+p@chr5:147491402..147491420
+
Hg19::chr5:147691979..147691997,+p1@SPINK7
Hg19::chr6:106808702..106808727,+p8@AIM1
Hg19::chr6:150219214..150219224,-p8@RAET1E
Hg19::chr6:150219232..150219254,-p2@RAET1E
Hg19::chr6:168096959..168096975,-p1@uc003qvy.1
Hg19::chr6:30043497..30043501,-p4@RNF39
Hg19::chr6:30951487..30951504,+p1@MUC21
Hg19::chr6:30954084..30954093,-p@chr6:30954084..30954093
-
Hg19::chr6:30954100..30954103,+p10@MUC21
Hg19::chr6:30954115..30954126,+p2@MUC21
Hg19::chr6:30954142..30954150,+p5@MUC21
Hg19::chr6:30954161..30954172,+p3@MUC21
Hg19::chr6:30954191..30954198,-p@chr6:30954191..30954198
-
Hg19::chr6:31600594..31600600,+p@chr6:31600594..31600600
+
Hg19::chr6:6799463..6799475,-p@chr6:6799463..6799475
-
Hg19::chr8:143823816..143823832,-p1@SLURP1
Hg19::chr8:143851234..143851252,-p2@LYNX1
Hg19::chr8:82500266..82500269,-p@chr8:82500266..82500269
-
Hg19::chr9:140119618..140119635,+p1@C9orf169
Hg19::chr9:75728805..75728845,-p@chr9:75728805..75728845
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

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ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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