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Coexpression cluster:C150

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Full id: C150_merkel_carcinoid_nonsmall_gastrointestinal_argyrophil_pineal_small



Phase1 CAGE Peaks

Hg19::chr11:31312303..31312307,-p@chr11:31312303..31312307
-
Hg19::chr11:31312513..31312524,-p@chr11:31312513..31312524
-
Hg19::chr12:54779280..54779298,-p10@ZNF385A
Hg19::chr12:54786411..54786421,-p@chr12:54786411..54786421
-
Hg19::chr12:65175253..65175283,-p@chr12:65175253..65175283
-
Hg19::chr12:660023..660044,+p@chr12:660023..660044
+
Hg19::chr12:70093235..70093242,-p6@BEST3
Hg19::chr13:79169067..79169071,-p@chr13:79169067..79169071
-
Hg19::chr13:79177629..79177636,-p4@POU4F1
Hg19::chr13:79177674..79177701,-p1@POU4F1
Hg19::chr14:106331164..106331201,-p2@IGHJ2P
Hg19::chr15:46610951..46610964,+p@chr15:46610951..46610964
+
Hg19::chr15:68114974..68114985,+p@chr15:68114974..68114985
+
Hg19::chr15:68117844..68117858,+p3@SKOR1
Hg19::chr15:68124190..68124195,-p@chr15:68124190..68124195
-
Hg19::chr16:3005195..3005202,-p@chr16:3005195..3005202
-
Hg19::chr16:53653257..53653264,-p@chr16:53653257..53653264
-
Hg19::chr16:67429759..67429769,-p@chr16:67429759..67429769
-
Hg19::chr16:70207349..70207353,-p1@ENST00000502126
p1@uc002eyi.1
Hg19::chr16:70207686..70207690,+p1@CLEC18C
Hg19::chr17:18012062..18012075,+p1@MYO15A
Hg19::chr17:48049323..48049330,+p6@DLX4
Hg19::chr17:61554829..61554849,+p@chr17:61554829..61554849
+
Hg19::chr17:61573742..61573786,+p@chr17:61573742..61573786
+
Hg19::chr17:61600483..61600515,+p2@KCNH6
Hg19::chr17:61600682..61600740,+p1@KCNH6
Hg19::chr17:61603769..61603773,+p@chr17:61603769..61603773
+
Hg19::chr18:5197501..5197504,-p3@C18orf42
Hg19::chr18:77543021..77543032,-p@chr18:77543021..77543032
-
Hg19::chr18:77543062..77543072,-p@chr18:77543062..77543072
-
Hg19::chr19:39401676..39401683,-p@chr19:39401676..39401683
-
Hg19::chr19:39402817..39402833,-p1@LOC643669
Hg19::chr19:47138167..47138185,-p1@GNG8
Hg19::chr19:47139424..47139443,-p@chr19:47139424..47139443
-
Hg19::chr19:49928618..49928665,+p@chr19:49928618..49928665
+
Hg19::chr19:49928666..49928692,+p@chr19:49928666..49928692
+
Hg19::chr19:57599766..57599777,+p@chr19:57599766..57599777
+
Hg19::chr1:155048200..155048207,+p@chr1:155048200..155048207
+
Hg19::chr1:160342039..160342041,+p@chr1:160342039..160342041
+
Hg19::chr1:17026663..17026700,-p@chr1:17026663..17026700
-
Hg19::chr1:216196797..216196801,-p@chr1:216196797..216196801
-
Hg19::chr1:216595350..216595395,-p@chr1:216595350..216595395
-
Hg19::chr1:242843433..242843446,-p@chr1:242843433..242843446
-
Hg19::chr1:40769918..40769923,-p@chr1:40769918..40769923
-
Hg19::chr1:40770344..40770353,-p29@COL9A2
Hg19::chr1:92949195..92949210,-p7@GFI1
Hg19::chr1:92949213..92949223,-p9@GFI1
Hg19::chr20:31116333..31116338,-p@chr20:31116333..31116338
-
Hg19::chr20:49727833..49727839,-p@chr20:49727833..49727839
-
Hg19::chr20:49727891..49727898,-p@chr20:49727891..49727898
-
Hg19::chr20:49727900..49727904,-p@chr20:49727900..49727904
-
Hg19::chr20:7391944..7391948,+p@chr20:7391944..7391948
+
Hg19::chr2:194367490..194367523,+p@chr2:194367490..194367523
+
Hg19::chr2:197078770..197078778,+p@chr2:197078770..197078778
+
Hg19::chr2:197080808..197080817,-p@chr2:197080808..197080817
-
Hg19::chr2:197081754..197081790,-p@chr2:197081754..197081790
-
Hg19::chr2:200325452..200325462,-p33@SATB2
Hg19::chr2:219846948..219846958,-p@chr2:219846948..219846958
-
Hg19::chr2:239149300..239149321,-p2@HES6
Hg19::chr2:96782288..96782301,-p2@ADRA2B
Hg19::chr2:96782304..96782315,-p1@ADRA2B
Hg19::chr3:181980650..181980653,-p@chr3:181980650..181980653
-
Hg19::chr3:182129789..182129798,-p@chr3:182129789..182129798
-
Hg19::chr3:182129807..182129809,-p@chr3:182129807..182129809
-
Hg19::chr3:182129895..182129901,-p@chr3:182129895..182129901
-
Hg19::chr3:182129918..182129932,-p@chr3:182129918..182129932
-
Hg19::chr3:182262882..182262922,-p@chr3:182262882..182262922
-
Hg19::chr3:192232532..192232549,-p@chr3:192232532..192232549
-
Hg19::chr3:85827683..85827691,+p@chr3:85827683..85827691
+
Hg19::chr3:85829954..85829989,-p@chr3:85829954..85829989
-
Hg19::chr4:132456095..132456124,-p@chr4:132456095..132456124
-
Hg19::chr4:173606828..173606840,-p@chr4:173606828..173606840
-
Hg19::chr4:17783004..17783015,-p3@FAM184B
Hg19::chr4:17783228..17783250,-p1@FAM184B
Hg19::chr4:6356121..6356152,-p@chr4:6356121..6356152
-
Hg19::chr4:77155662..77155702,-p@chr4:77155662..77155702
-
Hg19::chr4:94749897..94749909,+p1@ATOH1
Hg19::chr4:94750014..94750025,+p2@ATOH1
Hg19::chr4:94751839..94751843,+p@chr4:94751839..94751843
+
Hg19::chr4:94997408..94997423,-p@chr4:94997408..94997423
-
Hg19::chr5:145718398..145718410,+p1@POU4F3
Hg19::chr5:145718596..145718607,+p2@POU4F3
Hg19::chr5:145722450..145722456,+p@chr5:145722450..145722456
+
Hg19::chr5:145724630..145724641,+p@chr5:145724630..145724641
+
Hg19::chr5:145724642..145724652,+p@chr5:145724642..145724652
+
Hg19::chr5:145808948..145808956,+p@chr5:145808948..145808956
+
Hg19::chr5:168853885..168853910,-p@chr5:168853885..168853910
-
Hg19::chr5:50674304..50674338,-p@chr5:50674304..50674338
-
Hg19::chr5:63986233..63986261,+p2@FAM159B
Hg19::chr5:63986324..63986342,+p1@FAM159B
Hg19::chr5:64369050..64369067,+p@chr5:64369050..64369067
+
Hg19::chr5:64369069..64369083,+p@chr5:64369069..64369083
+
Hg19::chr5:64369097..64369105,+p@chr5:64369097..64369105
+
Hg19::chr6:112466463..112466468,+p@chr6:112466463..112466468
+
Hg19::chr6:129930311..129930322,-p@chr6:129930311..129930322
-
Hg19::chr6:129930348..129930359,-p@chr6:129930348..129930359
-
Hg19::chr6:133414003..133414011,-p@chr6:133414003..133414011
-
Hg19::chr6:152793691..152793718,-p8@SYNE1
Hg19::chr6:168502185..168502196,-p@chr6:168502185..168502196
-
Hg19::chr6:32862645..32862655,+p4@ENST00000499196
p4@uc003oci.1
Hg19::chr6:34507199..34507208,-p@chr6:34507199..34507208
-
Hg19::chr6:35773169..35773180,+p3@LHFPL5
Hg19::chr6:50807829..50807852,+p@chr6:50807829..50807852
+
Hg19::chr6:91865192..91865202,-p@chr6:91865192..91865202
-
Hg19::chr7:119914647..119914684,+p1@AB384090
Hg19::chr7:126173903..126173915,-p@chr7:126173903..126173915
-
Hg19::chr8:137528469..137528506,+p@chr8:137528469..137528506
+
Hg19::chr9:104302091..104302134,+p@chr9:104302091..104302134
+
Hg19::chr9:107573173..107573188,-p@chr9:107573173..107573188
-
Hg19::chr9:139089234..139089236,-p@chr9:139089234..139089236
-
Hg19::chr9:139096224..139096231,-p@chr9:139096224..139096231
-
Hg19::chr9:14346413..14346451,+p@chr9:14346413..14346451
+
Hg19::chr9:20236750..20236767,+p@chr9:20236750..20236767
+
Hg19::chrX:130021517..130021528,-p@chrX:130021517..130021528
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


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