Personal tools

MacroAPE 1083:9-HGASWSVGYG

From FANTOM5_SSTAR

Revision as of 11:59, 7 September 2012 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Full Name: 9-HGASWSVGYG,CNhs11049,BestGuess:EGR3_f1_HM09(0.70241249964471),T:910.0(37.05%),B:11649.9(25.90%),P:1e-33

Motif matrix
POACGT
1358.54238.420.91312.13
20.91180.18490.49238.42
3532.350.910.91375.83
462.79397.67321.23127.4
5406.770.910.91501.41
697.37384.93374.0153.69
7259.35203.84294.84151.97
80.910.91907.270.91
90.91504.140.91404.04
100.910.91907.270.91

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

YGR067C#MA0425.106.17935e-050.02941370.058827410AGACTCGGCGTGAAAAAGTGGGGT-
STP2#MA0395.1-10.001757910.8367640.8367649AGACTCGGCGTGATCGGCGCCGCACGACGA+
RSC3#MA0374.1-50.00383121.823650.996375AGACTCGGCGCCGCGCG-
IME1#MA0320.1-30.005742912.733630.996377AGACTCGGCGCTCGGCGG-
UGA3#MA0410.1-50.005742912.733630.996375AGACTCGGCGCGGCGGGA+
MGA1#MA0336.1-10.006279642.989110.996379AGACTCGGCGTTTAGAGTGTTCTATAGTCCT-
Trl#MA0205.1-10.009831564.6798219AGACTCGGCGGAGAGAGCAA-
Klf4#MA0039.2-40.01220855.8112416AGACTCGGCGTGGGTGGGGC+
DAL82#MA0291.1-20.01420266.7604318AGACTCGGCGAATGTGCGC+
Egr1#MA0162.100.01511087.19273110AGACTCGGCGTGCGTGGGCGT+
RTG3#MA0376.1-10.01738048.2730819AGACTCGGCGGACTAAGCACGTGCTAATAT-
UME6#MA0412.1-40.01982469.4365216AGACTCGGCGTCGGCGGCTAATT+