Personal tools

MacroAPE 1083:GGACCCCCTA,motif709

From FANTOM5_SSTAR

Revision as of 12:19, 7 September 2012 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Full Name: GGACCCCCTA,motif709,CNhs11974,T:1279.0(23.54%),B:13074.6(17.49%),P:1e-28

Motif matrix
POACGT
130.69690.8091125.5231.975
246.04452.4391107.61472.903
31044.94369.06678.01986.972
467.7871029.595112.55269.066
572.9031000.178115.1190.809
676.74963.087172.66566.508
7106.1571055.17544.76572.903
8116.3891006.57394.64661.392
9101.04174.182106.157997.62
10908.09121.505175.22374.182

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

Macho-1#MA0118.1-10.001033360.4918790.3677959GGACCCCCTAGAACCCCCA-
RGM1#MA0366.1-40.001040220.4951470.3677955GGACCCCCTACCCCT-
MSN4#MA0342.1-40.001159310.5518330.3677955GGACCCCCTACCCCT-
MSN2#MA0341.1-40.001987880.9462290.4729955GGACCCCCTACCCCT-
opa#MA0456.1-10.002761741.314590.5257029GGACCCCCTAGACCCCCCGCTG+
NFKB1#MA0105.130.005769582.746320.7114178GGACCCCCTAGGGGAATCCCC-
MZF1_5-13#MA0057.1-10.00594952.831960.7114179GGACCCCCTATTCCCCCTAC-
YER130C#MA0423.1-30.006605583.144260.7114177GGACCCCCTAACCCCTATT+
RPH1#MA0372.1-30.006727283.202190.7114177GGACCCCCTAACCCCTAA+
Zfp423#MA0116.1-10.008600944.094050.8186029GGACCCCCTAGCACCCCTGGGTGCC-
GIS1#MA0306.1-30.01081245.146710.9355287GGACCCCCTAACCCCTAAA+
CTCF#MA0139.120.0141486.734460.99974710GGACCCCCTATAGCGCCCCCTGGTGGCCA-
AFT2#MA0270.1-10.01848258.797690.9997478GGACCCCCTACACACCCC+