Personal tools

MacroAPE 1083:GTGACTSGG,motif114

From FANTOM5_SSTAR

Revision as of 13:29, 7 September 2012 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Full Name: GTGACTSGG,motif114,CNhs13475,T:1242.0(23.78%),B:12540.9(15.79%),P:1e-50

Motif matrix
POACGT
1124.2330.372571.32216.108
2336.582158.97627.324719.118
3158.976325.404755.1362.484
4659.5021.242285.66295.596
5182.574788.67264.5466.21
6243.43288.1821.242909.144
711.178516.672416.07298.08
8235.98119.232542.754344.034
98.694397.44818.47817.388

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

CRZ1#MA0285.100.0005219770.2484610.4106359GTGACTCGGGTGGCTTAG-
BAS1#MA0278.150.0008626780.4106350.4106359GTGACTCGGTTGACTTGACTCTGGCTGTGC-
NFE2L2#MA0150.100.001624510.7732660.4141659GTGACTCGGATGACTCAGCA+
ARG81#MA0272.100.001740190.8283310.4141658GTGACTCGGGTGACTCT+
ESR1#MA0112.280.006109112.907940.9950049GTGACTCGGAGGTCAGGGTGACCTGGGCC-
ESR1#MA0112.290.006271032.985010.9950049GTGACTCGGGGGGTCACGGTGACCTGG-
AP1#MA0099.2-10.009255274.4055117GTGACTCGGTGACTCA+
ESR2#MA0258.190.009798944.664319GTGACTCGGCAGGTCACCGTGACCTTG-
Pax2#MA0067.120.01147115.4602616GTGACTCGGGCGTGACT-
Pax4#MA0068.150.0182278.6760319GTGACTCGGGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
ARG80#MA0271.1-10.01869428.8984316GTGACTCGGAGACGC+
Fos#MA0099.100.02058779.7997718GTGACTCGGGTGAGTCA+