Personal tools

MacroAPE 1083:6-CGHYWRA

From FANTOM5_SSTAR

Revision as of 13:34, 7 September 2012 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Full Name: 6-CGHYWRA,CNhs13512,BestGuess:E2F1..5.p2.SwissRegulon.nucfreq(0.697446122117377),T:1104.0(43.33%),B:14028.8(31.59%),P:1e-34

Motif matrix
POACGT
1245.088683.3761.104174.432
21.1041.1041100.6881.104
3353.28397.441.104351.072
4259.44427.24881.696334.512
5518.881.104204.24379.776
6412.89676.176373.152241.776
7678.96178.848104.88141.312

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

YPR015C#MA0435.1120.002128461.0131517CGCCAAATGTAAGGATTTACGTCTTCA-
ABF1#MA0265.110.01319736.2819317CGCCAAATCGTATAAAGTGATAA+
id1#MA0120.100.01404696.6863217CGCCAAACGAAAAGGAAAA-
MGA1#MA0336.1140.01611137.6689917CGCCAAAAGGACTATAGAACACTCTAAA+