Personal tools

MacroAPE 1083:ACGAGACGGATGA,motif936

From FANTOM5_SSTAR

Revision as of 15:02, 7 September 2012 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Full Name: ACGAGACGGATGA,motif936,CNhs13469,T:2517.0(39.98%),B:26480.2(33.41%),P:1e-27

Motif matrix
POACGT
12139.45372.5162.5172.517
2188.7751560.54375.033392.652
32.5172.5172509.4492.517
42141.967186.2582.517186.258
52.5172.5172509.4492.517
61953.1922.517375.033186.258
7375.0331953.192186.2582.517
8392.652375.0331746.7982.517
92.517186.2582325.7082.517
102325.7082.517186.2582.517
11561.2912.5172.5171950.675
122.517186.2582325.7082.517
132325.7082.5172.517186.258

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

Myb#MA0100.1-40.005357622.5502318ACGAGACGGATGAGGCCGTTG+
ETS1#MA0098.1-60.006739583.2080416ACGAGACGGATGACGGAAA-
id1#MA0120.1-10.006761543.2185112ACGAGACGGATGACGAAAAGGAAAA-
ELK1#MA0028.1-20.007468213.55487110ACGAGACGGATGAGAGCCGGAAG+