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MCL coexpression mm9:121

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:10800785..10800821,-p3@Grm1
Mm9::chr10:69169067..69169072,+p44@Ank3
Mm9::chr10:69169074..69169130,+p4@Ank3
Mm9::chr11:114953151..114953171,+p3@Rab37
Mm9::chr11:118063929..118063943,-p9@Cyth1
Mm9::chr11:41993156..41993185,-p@chr11:41993156..41993185
-
Mm9::chr11:41993192..41993227,-p@chr11:41993192..41993227
-
Mm9::chr11:41995595..41995606,-p8@Gabra1
Mm9::chr11:41996426..41996437,-p12@Gabra1
Mm9::chr11:60835625..60835663,+p3@Kcnj12
Mm9::chr11:61267018..61267055,-p@chr11:61267018..61267055
-
Mm9::chr11:76391508..76391521,-p25@Abr
Mm9::chr11:76391527..76391550,-p26@Abr
Mm9::chr11:78136467..78136498,+p10@Aldoc
Mm9::chr11:87394547..87394569,+p2@Sept4
Mm9::chr11:97408516..97408538,-p@chr11:97408516..97408538
-
Mm9::chr12:109648835..109648872,+p8@Eml1
Mm9::chr12:11443304..11443315,-p3@Vsnl1
Mm9::chr12:91050907..91050928,+p2@LOC100505240
p3@Nrxn3
Mm9::chr13:109906367..109906396,+p20@Pde4d
Mm9::chr13:109906401..109906412,+p46@Pde4d
Mm9::chr14:50403002..50403069,-p1@3632451O06Rik
Mm9::chr15:22478819..22478837,+p3@Cdh18
Mm9::chr15:76351334..76351349,+p@chr15:76351334..76351349
+
Mm9::chr15:78034658..78034669,-p3@Pvalb
Mm9::chr15:78034859..78034880,-p4@Pvalb
Mm9::chr15:82086756..82086763,+p4@1500009C09Rik
Mm9::chr15:89354121..89354141,-p1@ENSMUST00000155610
Mm9::chr15:89354138..89354174,+p@chr15:89354138..89354174
+
Mm9::chr16:17489732..17489776,+p1@Aifm3
Mm9::chr16:17489784..17489796,+p4@Aifm3
Mm9::chr16:41533441..41533473,+p5@Lsamp
Mm9::chr17:35153521..35153549,+p2@D17H6S56E-3
Mm9::chr18:31476636..31476645,-p7@Rit2
Mm9::chr18:36124742..36124764,+p2@Psd2
Mm9::chr1:173310275..173310297,+p@chr1:173310275..173310297
+
Mm9::chr1:180728527..180728558,+p4@Kif26b
Mm9::chr1:180728579..180728598,+p5@Kif26b
Mm9::chr1:189475390..189475413,+p@chr1:189475390..189475413
+
Mm9::chr1:66514486..66514568,+p1@Unc80
Mm9::chr1:78306952..78306961,+p3@Sgpp2
Mm9::chr1:78306966..78306975,+p2@Sgpp2
Mm9::chr1:83404605..83404615,-p5@Sphkap
Mm9::chr2:135485029..135485093,+p1@Plcb4
Mm9::chr2:25284237..25284250,+p3@Abca2
Mm9::chr2:52414059..52414091,-p1@Cacnb4
Mm9::chr2:52414098..52414121,-p4@Cacnb4
Mm9::chr2:70401375..70401387,+p10@Gad1
Mm9::chr3:106904185..106904199,+p3@Kcna2
Mm9::chr3:114607131..114607142,+p7@Olfm3
Mm9::chr3:114607156..114607183,+p4@Olfm3
Mm9::chr3:115711293..115711320,+p3@Extl2
Mm9::chr3:58809735..58809787,+p1@Med12l
Mm9::chr4:123204925..123204955,-p4@Macf1
Mm9::chr4:123363950..123363972,-p@chr4:123363950..123363972
-
Mm9::chr4:133053687..133053703,-p4@Trnp1
Mm9::chr4:155068564..155068632,+p2@B930041F14Rik
Mm9::chr4:43532917..43532931,-p8@Tpm2
Mm9::chr4:98213322..98213346,+p10@Inadl
Mm9::chr4:98213353..98213380,+p9@Inadl
Mm9::chr4:98213387..98213400,+p14@Inadl
Mm9::chr4:98213401..98213430,+p6@Inadl
Mm9::chr4:98213437..98213454,+p13@Inadl
Mm9::chr4:98213488..98213496,+p19@Inadl
Mm9::chr4:98213588..98213600,+p15@Inadl
Mm9::chr4:98213610..98213650,+p8@Inadl
Mm9::chr5:121459010..121459026,-p@chr5:121459010..121459026
-
Mm9::chr5:121459642..121459653,-p8@Rph3a
Mm9::chr5:151062731..151062836,+p2@Fry
Mm9::chr5:27231168..27231211,+p6@Dpp6
Mm9::chr5:27231436..27231454,+p13@Dpp6
Mm9::chr6:21165331..21165353,+p3@Kcnd2
Mm9::chr7:114514259..114514362,+p1@Syt9
Mm9::chr7:147080756..147080765,+p4@Kndc1
Mm9::chr7:147080886..147080947,+p3@Kndc1
Mm9::chr7:51846256..51846275,+p@chr7:51846256..51846275
+
Mm9::chr7:51846276..51846287,+p@chr7:51846276..51846287
+
Mm9::chr7:51857960..51857971,+p@chr7:51857960..51857971
+
Mm9::chr7:51858002..51858013,+p@chr7:51858002..51858013
+
Mm9::chr7:53651809..53651909,+p1@Kcnc1
Mm9::chr7:53651910..53651927,+p3@Kcnc1
Mm9::chr7:70589627..70589648,+p3@Otud7a
Mm9::chr7:99383645..99383654,+p31@Dlg2
Mm9::chr8:107873195..107873269,+p@chr8:107873195..107873269
+
Mm9::chr8:112692104..112692121,-p1@Calb2
Mm9::chr8:122159367..122159378,-p4@Kcng4
Mm9::chr8:122159391..122159405,-p3@Kcng4
Mm9::chr8:122159411..122159436,-p1@Kcng4
Mm9::chr8:12915677..12915690,+p17@Mcf2l
Mm9::chr8:24085318..24085354,+p5@Ank1
Mm9::chr9:62384774..62384793,-p4@Coro2b
Mm9::chr9:73816477..73816516,-p@chr9:73816477..73816516
-
Mm9::chr9:73816838..73816852,-p@chr9:73816838..73816852
-
Mm9::chr9:73816906..73816916,-p@chr9:73816906..73816916
-
Mm9::chr9:86775482..86775494,-p2@Snap91
Mm9::chr9:86775533..86775547,-p4@Snap91
Mm9::chrX:154481337..154481357,-p4@Cnksr2
Mm9::chrX:35917464..35917511,-p5@Cul4b


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0022832voltage-gated channel activity5.46281443824709e-05
GO:0005244voltage-gated ion channel activity5.46281443824709e-05
GO:0022836gated channel activity5.46281443824709e-05
GO:0030955potassium ion binding5.46281443824709e-05
GO:0022843voltage-gated cation channel activity5.9829521478415e-05
GO:0005267potassium channel activity6.71191036190638e-05
GO:0005249voltage-gated potassium channel activity0.00015813775218387
GO:0006813potassium ion transport0.00015813775218387
GO:0005216ion channel activity0.00015813775218387
GO:0005261cation channel activity0.00015813775218387
GO:0006810transport0.00015813775218387
GO:0022838substrate specific channel activity0.00015813775218387
GO:0022803passive transmembrane transporter activity0.000195089637245008
GO:0015267channel activity0.000195089637245008
GO:0051234establishment of localization0.000218965924341008
GO:0031420alkali metal ion binding0.000218965924341008
GO:0046873metal ion transmembrane transporter activity0.000263444165235286
GO:0015672monovalent inorganic cation transport0.00026649576210231
GO:0008076voltage-gated potassium channel complex0.000333300568543689
GO:0043005neuron projection0.000342850293387198
GO:0008324cation transmembrane transporter activity0.000558767405071703
GO:0006812cation transport0.000559009696202542
GO:0015075ion transmembrane transporter activity0.000663243161274155
GO:0043167ion binding0.000726330344422852
GO:0042995cell projection0.00090387629864619
GO:0030001metal ion transport0.00132177725210837
GO:0006811ion transport0.00132679391348319
GO:0044459plasma membrane part0.00132933184711388
GO:0051179localization0.00133691254368944
GO:0022891substrate-specific transmembrane transporter activity0.00151817430017536
GO:0043169cation binding0.00164606578510599
GO:0005545phosphatidylinositol binding0.00164786492295682
GO:0046872metal ion binding0.00164786492295682
GO:0022857transmembrane transporter activity0.00405279853373158
GO:0030425dendrite0.00406690208467772
GO:0005515protein binding0.00420244736733918
GO:0014069postsynaptic density0.00622400578360955
GO:0030054cell junction0.00659649385206174
GO:0022892substrate-specific transporter activity0.00689964330255904
GO:0005886plasma membrane0.0119286533258434
GO:0007214gamma-aminobutyric acid signaling pathway0.0143826498396056
GO:0046058cAMP metabolic process0.0155740918566217
GO:0007268synaptic transmission0.0188610732759983
GO:0005856cytoskeleton0.0196214632416289
GO:0016020membrane0.0273462867634298
GO:0005737cytoplasm0.0278059016086383
GO:0050682AF-2 domain binding0.0281217401221158
GO:0048541Peyer's patch development0.0281217401221158
GO:0006198cAMP catabolic process0.0281217401221158
GO:0019226transmission of nerve impulse0.0299797907650224
GO:0044456synapse part0.0406339083788362
GO:0005509calcium ion binding0.0407723461329136
GO:0009187cyclic nucleotide metabolic process0.0420470992409571
GO:0016830carbon-carbon lyase activity0.0434883847637617
GO:0014051gamma-aminobutyric acid secretion0.0458730364726849
GO:0001566non-kinase phorbol ester receptor activity0.0458730364726849
GO:0001639PLC activating metabotropic glutamate receptor activity0.0458730364726849
GO:0004351glutamate decarboxylase activity0.0458730364726849
GO:0048537mucosal-associated lymphoid tissue development0.0458730364726849
GO:0001888glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity0.0458730364726849



Relative expression of the co-expression cluster over median <br>Analyst:


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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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