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MCL coexpression mm9:629

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Phase1 CAGE Peaks

 Short description
Mm9::chr7:149764044..149764059,-p2@H19
Mm9::chr7:149839494..149839523,+p@chr7:149839494..149839523
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Mm9::chr7:149839544..149839566,+p@chr7:149839544..149839566
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Mm9::chr7:149839570..149839604,+p@chr7:149839570..149839604
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Mm9::chr7:149839606..149839627,+p@chr7:149839606..149839627
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Mm9::chr7:149839638..149839649,+p@chr7:149839638..149839649
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Mm9::chr7:149839734..149839750,+p@chr7:149839734..149839750
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Mm9::chr7:149839753..149839780,+p@chr7:149839753..149839780
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Mm9::chr7:149839897..149839910,+p@chr7:149839897..149839910
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Mm9::chr7:149840218..149840258,+p@chr7:149840218..149840258
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Mm9::chr7:149841630..149841727,-p@chr7:149841630..149841727
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Mm9::chr7:149843377..149843391,-p1@Igf2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0032879regulation of localization0.00300216396179546
GO:0045175basal protein localization0.00300216396179546
GO:0030952establishment and/or maintenance of cytoskeleton polarity0.00300216396179546
GO:0030950establishment and/or maintenance of actin cytoskeleton polarity0.00300216396179546
GO:0032880regulation of protein localization0.00300216396179546
GO:0005159insulin-like growth factor receptor binding0.00300216396179546
GO:0007509mesoderm migration0.00300216396179546
GO:0008078mesodermal cell migration0.00300216396179546
GO:0007354zygotic determination of anterior/posterior axis, embryo0.00300216396179546
GO:0018445prothoracicotrophic hormone activity0.00300216396179546
GO:0048617embryonic foregut morphogenesis0.0041693294845452
GO:0010172embryonic body morphogenesis0.0041693294845452
GO:0048570notochord morphogenesis0.0041693294845452
GO:0008595determination of anterior/posterior axis, embryo0.0041693294845452
GO:0007440foregut morphogenesis0.0041693294845452
GO:0010171body morphogenesis0.0041693294845452
GO:0000578embryonic axis specification0.0041693294845452
GO:0007351tripartite regional subdivision0.0041693294845452
GO:0048613embryonic ectodermal gut morphogenesis0.00428833569223558
GO:0007350blastoderm segmentation0.00428833569223558
GO:0048611embryonic ectodermal gut development0.00428833569223558
GO:0009887organ morphogenesis0.00435714423625449
GO:0030903notochord development0.00435714423625449
GO:0045176apical protein localization0.00435714423625449
GO:0042074cell migration involved in gastrulation0.00435714423625449
GO:0050821protein stabilization0.00435714423625449
GO:0048558embryonic gut morphogenesis0.00435714423625449
GO:0031647regulation of protein stability0.00435714423625449
GO:0048340paraxial mesoderm morphogenesis0.00435714423625449
GO:0048557embryonic digestive tract morphogenesis0.00435714423625449
GO:0008105asymmetric protein localization0.00435714423625449
GO:0007439ectodermal gut development0.004547736374749
GO:0048567ectodermal gut morphogenesis0.004547736374749
GO:0048547gut morphogenesis0.00471652305618482
GO:0009948anterior/posterior axis specification0.00471652305618482
GO:0048546digestive tract morphogenesis0.00500209879068571
GO:0048339paraxial mesoderm development0.00500209879068571
GO:0035050embryonic heart tube development0.00500209879068571
GO:0048566embryonic gut development0.00500209879068571
GO:0030032lamellipodium biogenesis0.00562705272336775
GO:0009798axis specification0.00607331131572317
GO:0007492endoderm development0.00607331131572317
GO:0048565gut development0.00628084476182766
GO:0005184neuropeptide hormone activity0.00647892617758477
GO:0048562embryonic organ morphogenesis0.00700140307988403
GO:0001707mesoderm formation0.0081529139747819
GO:0048332mesoderm morphogenesis0.00829839814454409
GO:0001704formation of primary germ layer0.00843780333966878
GO:0001756somitogenesis0.0101007423278096
GO:0009653anatomical structure morphogenesis0.010105950238784
GO:0048568embryonic organ development0.0108797608047096
GO:0009880embryonic pattern specification0.0115347641465582
GO:0035282segmentation0.0118823316942051
GO:0001843neural tube closure0.0119396345965588
GO:0014020primary neural tube formation0.0122671123223192
GO:0048513organ development0.01245056148199
GO:0030031cell projection biogenesis0.01245056148199
GO:0007498mesoderm development0.01245056148199
GO:0030027lamellipodium0.01245056148199
GO:0001841neural tube formation0.0134904926600917
GO:0001839neural plate morphogenesis0.0135146947329491
GO:0001840neural plate development0.013560754755388
GO:0001838embryonic epithelial tube formation0.013560754755388
GO:0007369gastrulation0.0145178294380388
GO:0021915neural tube development0.0149849128520706
GO:0016331morphogenesis of embryonic epithelium0.016357140712145
GO:0048731system development0.016357140712145
GO:0048729tissue morphogenesis0.0165001390659627
GO:0031252leading edge0.0165001390659627
GO:0009952anterior/posterior pattern formation0.0201065831168786
GO:0048856anatomical structure development0.0209856892116161
GO:0001701in utero embryonic development0.0243912619149578
GO:0005179hormone activity0.0243912619149578
GO:0002009morphogenesis of an epithelium0.0248677111669075
GO:0007275multicellular organismal development0.0248872919805833
GO:0003002regionalization0.0285590405921332
GO:0035239tube morphogenesis0.0285590405921332
GO:0008083growth factor activity0.0285590405921332
GO:0030036actin cytoskeleton organization and biogenesis0.0291397516052694
GO:0030029actin filament-based process0.0308215683151415
GO:0007507heart development0.0313591960542605
GO:0048646anatomical structure formation0.0338773029091021
GO:0048598embryonic morphogenesis0.0357229325154513
GO:0035295tube development0.0357229325154513
GO:0016337cell-cell adhesion0.0365250647035108
GO:0032502developmental process0.0375818806547521
GO:0043009chordate embryonic development0.0379021662822594
GO:0009792embryonic development ending in birth or egg hatching0.0379769819609002
GO:0007389pattern specification process0.0392158139374696
GO:0032990cell part morphogenesis0.0432477490115378
GO:0048858cell projection morphogenesis0.0432477490115378
GO:0030030cell projection organization and biogenesis0.0432477490115378
GO:0016477cell migration0.0437368860730111
GO:0009888tissue development0.0445297979675441



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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