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MCL coexpression mm9:829

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Phase1 CAGE Peaks

 Short description
Mm9::chr16:10526454..10526466,+p@chr16:10526454..10526466
+
Mm9::chr16:10526557..10526561,+p@chr16:10526557..10526561
+
Mm9::chr17:34404939..34404950,+p11@H2-Ab1
Mm9::chr17:34420121..34420133,-p@chr17:34420121..34420133
-
Mm9::chr18:60971994..60972007,+p@chr18:60971994..60972007
+
Mm9::chr18:60972021..60972032,+p@chr18:60972021..60972032
+
Mm9::chr1:87497610..87497645,+p1@Gm2427
p1@Sp140
Mm9::chr1:89549906..89549917,+p@chr1:89549906..89549917
+
Mm9::chr4:3502131..3502140,+p6@Tgs1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0005771multivesicular body0.0155878198391758
GO:0042605peptide antigen binding0.0155878198391758
GO:0042613MHC class II protein complex0.0155878198391758
GO:0002495antigen processing and presentation of peptide antigen via MHC class II0.0155878198391758
GO:0019886antigen processing and presentation of exogenous peptide antigen via MHC class II0.0155878198391758
GO:0002478antigen processing and presentation of exogenous peptide antigen0.0155878198391758
GO:0002504antigen processing and presentation of peptide or polysaccharide antigen via MHC class II0.0155878198391758
GO:0005769early endosome0.0155878198391758
GO:0019884antigen processing and presentation of exogenous antigen0.0155878198391758
GO:0005770late endosome0.0155878198391758
GO:0042611MHC protein complex0.0155878198391758
GO:0048002antigen processing and presentation of peptide antigen0.0179898947319687
GO:0019882antigen processing and presentation0.0278220089141987
GO:0003823antigen binding0.047838884337837
GO:0045786negative regulation of progression through cell cycle0.047838884337837
GO:0042277peptide binding0.047838884337837
GO:0006260DNA replication0.047838884337837
GO:0009897external side of plasma membrane0.047838884337837



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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