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MCL coexpression mm9:1603

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:96214469..96214478,+p@chr11:96214469..96214478
+
Mm9::chr1:23278645..23278655,+p2@Mir30a
Mm9::chr2:170322641..170322647,-p1@Cyp24a1
Mm9::chr6:38074449..38074456,-p18@Atp6v0a4
Mm9::chr9:48547080..48547100,-p@chr9:48547080..48547100
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:000840325-hydroxycholecalciferol-24-hydroxylase activity0.0195584287514381
GO:0042359vitamin D metabolic process0.0260679047098323
GO:0033176proton-transporting V-type ATPase complex0.0260679047098323
GO:0016471vacuolar proton-transporting V-type ATPase complex0.0260679047098323
GO:0015991ATP hydrolysis coupled proton transport0.0260679047098323
GO:0015988energy coupled proton transport, against electrochemical gradient0.0260679047098323
GO:0005774vacuolar membrane0.042619183367311
GO:0044437vacuolar part0.042619183367311
GO:0005903brush border0.042619183367311
GO:0006775fat-soluble vitamin metabolic process0.042619183367311
GO:0008553hydrogen-exporting ATPase activity, phosphorylative mechanism0.042619183367311



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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