Personal tools

MCL coexpression mm9:2256

From FANTOM5_SSTAR

Revision as of 16:17, 10 October 2012 by Autoedit (talk | contribs) (Created page with "{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0047316;glutamine-phenylpyruvate transaminase activity;0.00306773668792135;70266!GO:0047804;cysteine-S-conjugate beta-lyas...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search


Phase1 CAGE Peaks

 Short description
Mm9::chr19:30026255..30026269,+p4@Il33
Mm9::chr19:30026298..30026309,+p5@Il33
Mm9::chr2:30049656..30049663,-p9@Ccbl1
Mm9::chr7:25440799..25440805,+p@chr7:25440799..25440805
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0047316glutamine-phenylpyruvate transaminase activity0.00306773668792135
GO:0047804cysteine-S-conjugate beta-lyase activity0.00306773668792135
GO:0016212kynurenine-oxoglutarate transaminase activity0.00306773668792135
GO:00168471-aminocyclopropane-1-carboxylate synthase activity0.00306773668792135
GO:0016846carbon-sulfur lyase activity0.00552116963075752
GO:0008483transaminase activity0.0137961164093854
GO:0016769transferase activity, transferring nitrogenous groups0.0153256564215353
GO:0030170pyridoxal phosphate binding0.0176191890209396
GO:0019842vitamin binding0.0356912280066465
GO:0016829lyase activity0.0464405293992843
GO:0048037cofactor binding0.0466421952795109



Relative expression of the co-expression cluster over median <br>Analyst:



"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}