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MCL coexpression mm9:2691

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:58768177..58768198,+p1@Hist3h2a
p1@Trim17
Mm9::chr13:21879349..21879363,+p1@Hist1h2bp
Mm9::chr18:34911457..34911472,+p2@ENSMUST00000142855
p2@uc008elg.1
p2@uc008elh.1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0006334nucleosome assembly0.000388493293769138
GO:0000786nucleosome0.000388493293769138
GO:0031497chromatin assembly0.000388493293769138
GO:0065004protein-DNA complex assembly0.000388493293769138
GO:0006333chromatin assembly or disassembly0.000388493293769138
GO:0000785chromatin0.000704443506259013
GO:0006325establishment and/or maintenance of chromatin architecture0.00107431626855199
GO:0006323DNA packaging0.00107431626855199
GO:0044427chromosomal part0.00112818178763081
GO:0065003macromolecular complex assembly0.00112818178763081
GO:0005694chromosome0.00125034159903033
GO:0022607cellular component assembly0.00125034159903033
GO:0051276chromosome organization and biogenesis0.00125034159903033
GO:0006259DNA metabolic process0.00301669719131127
GO:0006996organelle organization and biogenesis0.00917587853939728
GO:0043232intracellular non-membrane-bound organelle0.0143509833339534
GO:0043228non-membrane-bound organelle0.0143509833339534
GO:0043234protein complex0.015371719237048
GO:0003677DNA binding0.0204462350410961
GO:0032991macromolecular complex0.0219648473661512
GO:0044446intracellular organelle part0.0265200604225829
GO:0044422organelle part0.0265200604225829
GO:0016043cellular component organization and biogenesis0.0265200604225829
GO:0003676nucleic acid binding0.0350709108219289
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0391014325529621



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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