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MCL coexpression mm9:212

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:86484671..86484688,-p14@Vmp1
Mm9::chr1:95917036..95917062,+p1@Neu4
Mm9::chr4:101223802..101223807,-p@chr4:101223802..101223807
-
Mm9::chr9:120084007..120084018,+p@chr9:120084007..120084018
+
Mm9::chr9:120084080..120084094,+p@chr9:120084080..120084094
+
Mm9::chr9:120084144..120084162,+p@chr9:120084144..120084162
+
Mm9::chr9:120088783..120088795,+p@chr9:120088783..120088795
+
Mm9::chr9:120089157..120089170,+p@chr9:120089157..120089170
+
Mm9::chr9:120089403..120089416,+p@chr9:120089403..120089416
+
Mm9::chrX:133365683..133365695,+p12@Plp1
Mm9::chrX:133365756..133365765,+p14@Plp1
Mm9::chrX:133366557..133366580,+p@chrX:133366557..133366580
+
Mm9::chrX:133366664..133366688,+p@chrX:133366664..133366688
+
Mm9::chrX:133367808..133367821,+p4@Plp1
Mm9::chrX:133367835..133367892,+p3@Plp1
Mm9::chrX:133367942..133367952,+p10@Plp1
Mm9::chrX:133368690..133368741,+p@chrX:133368690..133368741
+
Mm9::chrX:133369636..133369682,+p@chrX:133369636..133369682
+
Mm9::chrX:133371343..133371355,+p@chrX:133371343..133371355
+
Mm9::chrX:133371663..133371686,+p@chrX:133371663..133371686
+
Mm9::chrX:133371693..133371705,+p@chrX:133371693..133371705
+
Mm9::chrX:133371747..133371758,+p@chrX:133371747..133371758
+
Mm9::chrX:133371769..133371785,+p@chrX:133371769..133371785
+
Mm9::chrX:133371820..133371834,+p@chrX:133371820..133371834
+
Mm9::chrX:133371872..133371900,+p@chrX:133371872..133371900
+
Mm9::chrX:133371908..133371920,+p@chrX:133371908..133371920
+
Mm9::chrX:133371961..133371972,+p@chrX:133371961..133371972
+
Mm9::chrX:133371982..133371996,+p@chrX:133371982..133371996
+
Mm9::chrX:133372000..133372007,+p@chrX:133372000..133372007
+
Mm9::chrX:133372008..133372027,+p@chrX:133372008..133372027
+
Mm9::chrX:133372040..133372053,+p@chrX:133372040..133372053
+
Mm9::chrX:133372057..133372068,+p@chrX:133372057..133372068
+
Mm9::chrX:133372076..133372105,+p@chrX:133372076..133372105
+
Mm9::chrX:133372108..133372115,+p@chrX:133372108..133372115
+
Mm9::chrX:133372121..133372126,+p@chrX:133372121..133372126
+
Mm9::chrX:133372129..133372164,+p@chrX:133372129..133372164
+
Mm9::chrX:133372165..133372186,+p@chrX:133372165..133372186
+
Mm9::chrX:133372407..133372423,+p@chrX:133372407..133372423
+
Mm9::chrX:133372446..133372459,+p@chrX:133372446..133372459
+
Mm9::chrX:133372528..133372539,+p@chrX:133372528..133372539
+
Mm9::chrX:133372559..133372564,+p@chrX:133372559..133372564
+
Mm9::chrX:133372612..133372625,+p@chrX:133372612..133372625
+
Mm9::chrX:133372643..133372665,+p@chrX:133372643..133372665
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0022010myelination in the central nervous system0.00345148742672438
GO:0032291ensheathment of axons in the central nervous system0.00345148742672438
GO:0004308exo-alpha-sialidase activity0.00460185716771568
GO:0016997alpha-sialidase activity0.00493015603281988
GO:0042759long-chain fatty acid biosynthetic process0.00493015603281988
GO:0043209myelin sheath0.00493015603281988
GO:0014003oligodendrocyte development0.00493015603281988
GO:0021782glial cell development0.00766808104063517
GO:0048709oligodendrocyte differentiation0.00766808104063517
GO:0001676long-chain fatty acid metabolic process0.00966072314069902
GO:0042552myelination0.0153871323097943
GO:0008366axon ensheathment0.0153871323097943
GO:0007272ensheathment of neurons0.0153871323097943
GO:0001508regulation of action potential0.0174698111462984
GO:0010001glial cell differentiation0.0174698111462984
GO:0042063gliogenesis0.0176694901197512
GO:0006633fatty acid biosynthetic process0.0254899305412603
GO:0046394carboxylic acid biosynthetic process0.0254899305412603
GO:0016053organic acid biosynthetic process0.0254899305412603
GO:0048469cell maturation0.0254899305412603
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds0.0284828166957132
GO:0021700developmental maturation0.0284828166957132
GO:0016798hydrolase activity, acting on glycosyl bonds0.0323189575174909
GO:0006631fatty acid metabolic process0.0458193843685796



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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