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MCL coexpression mm9:700

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:113427054..113427106,-p1@Slc39a11
Mm9::chr11:5420973..5420992,+p1@Xbp1
Mm9::chr11:84683690..84683732,-p4@Ggnbp2
Mm9::chr12:70285164..70285205,+p1@Mgat2
Mm9::chr15:88906488..88906535,+p1@Trabd
Mm9::chr17:74738503..74738558,+p@chr17:74738503..74738558
+
Mm9::chr5:31262609..31262693,-p1@Preb
Mm9::chr5:31262699..31262712,-p2@Preb
Mm9::chr6:108778627..108778715,+p1@Edem1
Mm9::chr8:72826660..72826703,+p1@Cope


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0005783endoplasmic reticulum0.0226217276537667
GO:0046462monoacylglycerol metabolic process0.0380066257364183
GO:0006890retrograde vesicle-mediated transport, Golgi to ER0.0380066257364183
GO:00038462-acylglycerol O-acyltransferase activity0.0380066257364183
GO:0019432triacylglycerol biosynthetic process0.0380066257364183
GO:0006651diacylglycerol biosynthetic process0.0380066257364183
GO:0030433ER-associated protein catabolic process0.0380066257364183
GO:0004571mannosyl-oligosaccharide 1,2-alpha-mannosidase activity0.0380066257364183
GO:0006515misfolded or incompletely synthesized protein catabolic process0.0380066257364183
GO:0043231intracellular membrane-bound organelle0.0380066257364183
GO:0043227membrane-bound organelle0.0380066257364183
GO:0015924mannosyl-oligosaccharide mannosidase activity0.0380066257364183
GO:0046460neutral lipid biosynthetic process0.0380066257364183
GO:0046463acylglycerol biosynthetic process0.0380066257364183
GO:0046504glycerol ether biosynthetic process0.0380066257364183
GO:0045017glycerolipid biosynthetic process0.0380066257364183
GO:0046339diacylglycerol metabolic process0.0380066257364183
GO:0050892intestinal absorption0.0380066257364183
GO:0030126COPI vesicle coat0.0380066257364183
GO:0030663COPI coated vesicle membrane0.0380066257364183
GO:0044444cytoplasmic part0.042213393607381
GO:0030137COPI-coated vesicle0.042213393607381
GO:0043161proteasomal ubiquitin-dependent protein catabolic process0.0429068815323417
GO:0022600digestive system process0.0429068815323417
GO:0016411acylglycerol O-acyltransferase activity0.0429068815323417
GO:0015923mannosidase activity0.0429068815323417
GO:0031410cytoplasmic vesicle0.0429068815323417
GO:0043229intracellular organelle0.0429068815323417
GO:0012505endomembrane system0.0429068815323417
GO:0043226organelle0.0429068815323417
GO:0031982vesicle0.0431141534842245
GO:0006641triacylglycerol metabolic process0.0481607130753447
GO:0006071glycerol metabolic process0.0481607130753447
GO:0019751polyol metabolic process0.0481607130753447
GO:0030176integral to endoplasmic reticulum membrane0.0481607130753447
GO:0006829zinc ion transport0.0497453160918431
GO:0005737cytoplasm0.0497453160918431
GO:0031227intrinsic to endoplasmic reticulum membrane0.0497453160918431
GO:0030120vesicle coat0.0497453160918431
GO:0006639acylglycerol metabolic process0.0497453160918431
GO:0046486glycerolipid metabolic process0.0497453160918431
GO:0006638neutral lipid metabolic process0.0497453160918431
GO:0030662coated vesicle membrane0.0497453160918431
GO:0006662glycerol ether metabolic process0.0497453160918431



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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