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MCL coexpression mm9:1402

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Phase1 CAGE Peaks

 Short description
Mm9::chr17:56601566..56601666,-p2@Ptprs
Mm9::chr4:134108037..134108115,-p1@Sepn1
Mm9::chr6:29685471..29685547,+p1@Smo
Mm9::chr6:29685631..29685663,+p2@Smo
Mm9::chr6:29685667..29685680,+p3@Smo
Mm9::chr7:86860574..86860635,-p@chr7:86860574..86860635
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0051100negative regulation of binding0.0183440988746465
GO:0043392negative regulation of DNA binding0.0183440988746465
GO:0021938smoothened signaling pathway in regulation of granule cell precursor cell proliferation0.0183440988746465
GO:0021937Purkinje cell-granule cell precursor cell signaling involved in regulation of granule cell precursor cell proliferation0.0183440988746465
GO:0002052positive regulation of neuroblast proliferation0.0183440988746465
GO:0004727prenylated protein tyrosine phosphatase activity0.0183440988746465
GO:0021940positive regulation of granule cell precursor proliferation0.0183440988746465
GO:0021936regulation of granule cell precursor proliferation0.0183440988746465
GO:0021534cell proliferation in hindbrain0.0183440988746465
GO:0021924cell proliferation in the external granule layer0.0183440988746465
GO:0021930granule cell precursor proliferation0.0183440988746465
GO:0051101regulation of DNA binding0.0183440988746465
GO:0004926non-G-protein coupled 7TM receptor activity0.0186252951044767
GO:0021696cerebellar cortex morphogenesis0.0220056817904624
GO:0021587cerebellum morphogenesis0.0220056817904624
GO:0021575hindbrain morphogenesis0.0220056817904624
GO:0021695cerebellar cortex development0.0229523844659907
GO:0007185transmembrane receptor protein tyrosine phosphatase signaling pathway0.0229523844659907
GO:0051098regulation of binding0.0229523844659907
GO:0001755neural crest cell migration0.0229523844659907
GO:0022037metencephalon development0.0229523844659907
GO:0021549cerebellum development0.0229523844659907
GO:0021953central nervous system neuron differentiation0.0229523844659907
GO:0007405neuroblast proliferation0.0231659527747764
GO:0001649osteoblast differentiation0.0231659527747764
GO:0007224smoothened signaling pathway0.0231659527747764
GO:0001570vasculogenesis0.0231659527747764
GO:0014032neural crest cell development0.0231659527747764
GO:0014033neural crest cell differentiation0.0231659527747764
GO:0007368determination of left/right symmetry0.0231659527747764
GO:0003007heart morphogenesis0.0231659527747764
GO:0009799determination of symmetry0.0231659527747764
GO:0009855determination of bilateral symmetry0.0231659527747764
GO:0042475odontogenesis of dentine-containing teeth0.0231659527747764
GO:0042476odontogenesis0.0231659527747764
GO:0048762mesenchymal cell differentiation0.0231659527747764
GO:0014031mesenchymal cell development0.0231659527747764
GO:0030902hindbrain development0.0242267904896349
GO:0009953dorsal/ventral pattern formation0.0242267904896349
GO:0048589developmental growth0.0263605344081711
GO:0005929cilium0.0358600873421324
GO:0004725protein tyrosine phosphatase activity0.0448866127346977
GO:0001503ossification0.0468114595328525
GO:0031214biomineral formation0.0468114595328525



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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