Personal tools

MCL coexpression mm9:57

From FANTOM5_SSTAR

Revision as of 12:36, 11 October 2012 by Autoedit (talk | contribs)
Jump to: navigation, search


Phase1 CAGE Peaks

 Short description
Mm9::chr10:106069807..106069869,+p@chr10:106069807..106069869
+
Mm9::chr10:127662886..127662901,+p1@Mip
Mm9::chr10:127662999..127663017,+p@chr10:127662999..127663017
+
Mm9::chr10:127668442..127668453,+p@chr10:127668442..127668453
+
Mm9::chr10:127668480..127668491,+p@chr10:127668480..127668491
+
Mm9::chr10:127668637..127668650,+p3@LOC100504989
p3@Timeless
Mm9::chr10:127668686..127668697,+p4@LOC100504989
p4@Timeless
Mm9::chr10:128143307..128143320,+p1@Pmel
Mm9::chr10:61247209..61247211,-p16@H2afy2
Mm9::chr10:67364011..67364018,-p5@Zfp365
Mm9::chr10:76285563..76285576,-p2@Pcbp3
Mm9::chr10:91838112..91838131,-p@chr10:91838112..91838131
-
Mm9::chr11:106368382..106368420,-p@chr11:106368382..106368420
-
Mm9::chr11:3622163..3622187,-p8@Osbp2
Mm9::chr11:5876322..5876332,-p@chr11:5876322..5876332
-
Mm9::chr11:77532298..77532314,+p@chr11:77532298..77532314
+
Mm9::chr11:77532391..77532408,-p@chr11:77532391..77532408
-
Mm9::chr11:77533012..77533024,-p@chr11:77533012..77533024
-
Mm9::chr11:77534437..77534448,-p@chr11:77534437..77534448
-
Mm9::chr11:77536107..77536146,+p@chr11:77536107..77536146
+
Mm9::chr11:77536139..77536148,-p@chr11:77536139..77536148
-
Mm9::chr11:77536164..77536175,-p@chr11:77536164..77536175
-
Mm9::chr11:77536179..77536199,-p@chr11:77536179..77536199
-
Mm9::chr11:77538783..77538796,-p1@Cryba1
Mm9::chr11:78128562..78128578,+p3@Spag5
Mm9::chr11:89679963..89679974,-p@chr11:89679963..89679974
-
Mm9::chr12:12834841..12834875,+p@chr12:12834841..12834875
+
Mm9::chr12:45540033..45540056,+p4@Nrcam
Mm9::chr12:56700411..56700416,+p2@Insm2
Mm9::chr12:85912452..85912495,+p@chr12:85912452..85912495
+
Mm9::chr13:106040518..106040527,-p@chr13:106040518..106040527
-
Mm9::chr13:106040529..106040559,-p@chr13:106040529..106040559
-
Mm9::chr13:106040570..106040579,-p@chr13:106040570..106040579
-
Mm9::chr13:110050580..110050595,+p14@Pde4d
Mm9::chr13:54011109..54011118,-p@chr13:54011109..54011118
-
Mm9::chr13:83739005..83739009,-p@chr13:83739005..83739009
-
Mm9::chr14:104858550..104858554,-p1@uc007uxa.1
p1@uc011zpm.1
Mm9::chr14:118451246..118451249,-p5@Dct
Mm9::chr14:118451263..118451285,-p3@Dct
Mm9::chr14:18814147..18814153,+p5@Thrb
Mm9::chr14:34767226..34767245,+p3@Rbp3
Mm9::chr14:35413322..35413333,-p1@Opn4
Mm9::chr14:49498256..49498278,+p1@4933429O19Rik
Mm9::chr14:57675505..57675512,+p@chr14:57675505..57675512
+
Mm9::chr14:57676505..57676563,-p1@Gja3
Mm9::chr14:57676711..57676721,+p@chr14:57676711..57676721
+
Mm9::chr15:25375388..25375398,-p@chr15:25375388..25375398
-
Mm9::chr15:7392478..7392489,+p@chr15:7392478..7392489
+
Mm9::chr15:79085167..79085194,-p1@Slc16a8
Mm9::chr16:56282265..56282274,+p@chr16:56282265..56282274
+
Mm9::chr16:76022511..76022532,-p4@Samsn1
Mm9::chr17:30734832..30734846,-p@chr17:30734832..30734846
-
Mm9::chr17:31814869..31814884,+p1@Cryaa
Mm9::chr17:31815054..31815069,-p@chr17:31815054..31815069
-
Mm9::chr17:31815076..31815111,-p@chr17:31815076..31815111
-
Mm9::chr17:31815126..31815139,-p@chr17:31815126..31815139
-
Mm9::chr17:31815443..31815485,-p@chr17:31815443..31815485
-
Mm9::chr17:31815869..31815879,+p@chr17:31815869..31815879
+
Mm9::chr17:31816514..31816526,+p@chr17:31816514..31816526
+
Mm9::chr17:31816584..31816600,+p@chr17:31816584..31816600
+
Mm9::chr17:31817947..31817965,+p@chr17:31817947..31817965
+
Mm9::chr17:31817987..31818013,+p@chr17:31817987..31818013
+
Mm9::chr17:31818088..31818097,+p@chr17:31818088..31818097
+
Mm9::chr17:31818106..31818119,+p@chr17:31818106..31818119
+
Mm9::chr17:31818215..31818239,-p@chr17:31818215..31818239
-
Mm9::chr17:31818240..31818244,+p@chr17:31818240..31818244
+
Mm9::chr17:31818263..31818276,+p@chr17:31818263..31818276
+
Mm9::chr17:31818475..31818482,-p@chr17:31818475..31818482
-
Mm9::chr17:31818540..31818548,-p@chr17:31818540..31818548
-
Mm9::chr17:31818662..31818669,-p@chr17:31818662..31818669
-
Mm9::chr17:66585086..66585093,+p@chr17:66585086..66585093
+
Mm9::chr17:86014387..86014398,-p4@ENSMUST00000162311
Mm9::chr18:32157784..32157811,-p@chr18:32157784..32157811
-
Mm9::chr18:66165742..66165743,-p@chr18:66165742..66165743
-
Mm9::chr19:10312449..10312462,-p@chr19:10312449..10312462
-
Mm9::chr19:19075560..19075565,-p6@Rorb
Mm9::chr19:19079729..19079752,-p@chr19:19079729..19079752
-
Mm9::chr19:22809449..22809470,+p@chr19:22809449..22809470
+
Mm9::chr19:22988115..22988122,+p@chr19:22988115..22988122
+
Mm9::chr19:40774271..40774276,-p@chr19:40774271..40774276
-
Mm9::chr19:44014246..44014249,+p@chr19:44014246..44014249
+
Mm9::chr19:56500173..56500184,+p@chr19:56500173..56500184
+
Mm9::chr19:56500206..56500232,+p@chr19:56500206..56500232
+
Mm9::chr1:191983671..191983696,+p@chr1:191983671..191983696
+
Mm9::chr1:34134125..34134135,+p@chr1:34134125..34134135
+
Mm9::chr1:34134139..34134147,+p@chr1:34134139..34134147
+
Mm9::chr1:38092538..38092550,+p@chr1:38092538..38092550
+
Mm9::chr1:38092554..38092561,+p@chr1:38092554..38092561
+
Mm9::chr1:38092626..38092667,+p@chr1:38092626..38092667
+
Mm9::chr1:38099622..38099636,+p@chr1:38099622..38099636
+
Mm9::chr1:64282283..64282286,+p@chr1:64282283..64282286
+
Mm9::chr1:65097722..65097724,-p1@Cryge
Mm9::chr1:65097805..65097815,-p2@Cryge
Mm9::chr1:65108572..65108588,+p@chr1:65108572..65108588
+
Mm9::chr1:65108672..65108692,-p@chr1:65108672..65108692
-
Mm9::chr1:65127094..65127099,+p@chr1:65127094..65127099
+
Mm9::chr1:65127100..65127117,+p@chr1:65127100..65127117
+
Mm9::chr1:65128858..65128873,-p1@Crygb
Mm9::chr1:65146967..65146972,+p@chr1:65146967..65146972
+
Mm9::chr1:65147082..65147090,+p@chr1:65147082..65147090
+
Mm9::chr1:65147092..65147104,+p@chr1:65147092..65147104
+
Mm9::chr1:65147108..65147116,+p@chr1:65147108..65147116
+
Mm9::chr1:65147169..65147178,+p@chr1:65147169..65147178
+
Mm9::chr1:65147197..65147217,+p@chr1:65147197..65147217
+
Mm9::chr1:65147201..65147212,-p@chr1:65147201..65147212
-
Mm9::chr1:65147224..65147236,-p@chr1:65147224..65147236
-
Mm9::chr1:65147227..65147270,+p@chr1:65147227..65147270
+
Mm9::chr1:65147246..65147257,-p@chr1:65147246..65147257
-
Mm9::chr1:65149581..65149597,-p4@Cryga
Mm9::chr1:65149620..65149639,+p@chr1:65149620..65149639
+
Mm9::chr1:65149656..65149674,-p2@Cryga
Mm9::chr1:65149723..65149746,-p3@Cryga
Mm9::chr1:65149937..65149952,-p1@Cryga
Mm9::chr1:65973093..65973097,+p1@Crygf
Mm9::chr1:74939387..74939400,-p2@Cryba2
Mm9::chr1:74939683..74939697,-p1@Cryba2
Mm9::chr1:92672250..92672261,-p@chr1:92672250..92672261
-
Mm9::chr1:92672306..92672319,-p@chr1:92672306..92672319
-
Mm9::chr2:105509045..105509071,+p1@Pax6
Mm9::chr2:105510448..105510455,-p1@ENSMUST00000126948
Mm9::chr2:105510458..105510479,-p1@Pax6os1
Mm9::chr2:105514135..105514138,-p@chr2:105514135..105514138
-
Mm9::chr2:105522662..105522687,+p2@Pax6
Mm9::chr2:105522840..105522844,+p22@Pax6
Mm9::chr2:105522885..105522902,+p15@Pax6
Mm9::chr2:105529735..105529744,+p33@Pax6
Mm9::chr2:105531745..105531753,+p@chr2:105531745..105531753
+
Mm9::chr2:105921184..105921192,+p@chr2:105921184..105921192
+
Mm9::chr2:143686206..143686215,-p@chr2:143686206..143686215
-
Mm9::chr2:143688669..143688686,-p1@Bfsp1
Mm9::chr2:149624452..149624465,-p1@uc008mtv.1
Mm9::chr2:24118975..24118976,+p@chr2:24118975..24118976
+
Mm9::chr2:38021679..38021686,-p6@Dennd1a
Mm9::chr2:59644211..59644215,+p16@Tanc1
Mm9::chr2:66003437..66003443,-p@chr2:66003437..66003443
-
Mm9::chr2:90827738..90827749,+p3@Celf1
Mm9::chr2:93906955..93906973,-p2@Hsd17b12
Mm9::chr3:107896027..107896038,+p2@Gnat2
Mm9::chr3:129525435..129525448,-p2@Rrh
Mm9::chr3:129525452..129525463,-p3@Rrh
Mm9::chr3:17594612..17594614,-p@chr3:17594612..17594614
-
Mm9::chr3:17685305..17685316,-p@chr3:17685305..17685316
-
Mm9::chr3:34488839..34488876,+p1@ENSMUST00000173365
Mm9::chr3:34488949..34488953,+p2@ENSMUST00000173365
Mm9::chr3:51204614..51204642,-p@chr3:51204614..51204642
-
Mm9::chr3:55586452..55586471,+p2@Mab21l1
Mm9::chr3:89227307..89227319,+p@chr3:89227307..89227319
+
Mm9::chr3:8964222..8964240,-p5@Tpd52
Mm9::chr3:8964367..8964401,-p9@Tpd52
Mm9::chr4:133800107..133800119,+p2@ENSMUST00000134320
Mm9::chr4:153708869..153708872,-p24@Prdm16
Mm9::chr4:153708892..153708904,-p13@Prdm16
Mm9::chr4:45978199..45978214,+p3@Tdrd7
Mm9::chr4:62129914..62129937,-p3@Wdr31
Mm9::chr4:80480234..80480259,+p2@Tyrp1
Mm9::chr4:8767481..8767494,+p14@Chd7
Mm9::chr5:112681470..112681483,-p@chr5:112681470..112681483
-
Mm9::chr5:112681533..112681545,-p1@Cryba4
Mm9::chr5:112684833..112684847,+p1@Crybb1
Mm9::chr5:112686483..112686494,+p@chr5:112686483..112686494
+
Mm9::chr5:112686589..112686602,+p@chr5:112686589..112686602
+
Mm9::chr5:112688645..112688679,+p@chr5:112688645..112688679
+
Mm9::chr5:112690605..112690616,+p@chr5:112690605..112690616
+
Mm9::chr5:112690636..112690656,+p@chr5:112690636..112690656
+
Mm9::chr5:112690662..112690673,+p@chr5:112690662..112690673
+
Mm9::chr5:112690693..112690701,+p@chr5:112690693..112690701
+
Mm9::chr5:112690702..112690710,+p@chr5:112690702..112690710
+
Mm9::chr5:112690729..112690741,+p@chr5:112690729..112690741
+
Mm9::chr5:112690744..112690755,+p@chr5:112690744..112690755
+
Mm9::chr5:112690811..112690820,+p@chr5:112690811..112690820
+
Mm9::chr5:112690822..112690873,+p@chr5:112690822..112690873
+
Mm9::chr5:112690902..112690913,+p@chr5:112690902..112690913
+
Mm9::chr5:112690918..112690927,+p@chr5:112690918..112690927
+
Mm9::chr5:112690963..112690994,+p@chr5:112690963..112690994
+
Mm9::chr5:112691002..112691043,+p@chr5:112691002..112691043
+
Mm9::chr5:112691047..112691066,+p@chr5:112691047..112691066
+
Mm9::chr5:112692535..112692546,+p@chr5:112692535..112692546
+
Mm9::chr5:112692580..112692595,+p@chr5:112692580..112692595
+
Mm9::chr5:112696373..112696382,-p@chr5:112696373..112696382
-
Mm9::chr5:112696408..112696421,-p@chr5:112696408..112696421
-
Mm9::chr5:112696538..112696545,+p@chr5:112696538..112696545
+
Mm9::chr5:112696564..112696577,+p@chr5:112696564..112696577
+
Mm9::chr5:112698330..112698338,+p@chr5:112698330..112698338
+
Mm9::chr5:112698477..112698484,+p@chr5:112698477..112698484
+
Mm9::chr5:112698505..112698537,-p@chr5:112698505..112698537
-
Mm9::chr5:112698549..112698571,-p@chr5:112698549..112698571
-
Mm9::chr5:113498772..113498784,-p2@Crybb2
Mm9::chr5:113506142..113506151,-p@chr5:113506142..113506151
-
Mm9::chr5:113506170..113506184,-p@chr5:113506170..113506184
-
Mm9::chr5:113506190..113506202,-p@chr5:113506190..113506202
-
Mm9::chr5:113506250..113506259,-p@chr5:113506250..113506259
-
Mm9::chr5:113507470..113507483,-p@chr5:113507470..113507483
-
Mm9::chr5:113510600..113510604,-p1@Crybb3
Mm9::chr5:115879504..115879518,-p@chr5:115879504..115879518
-
Mm9::chr5:115880589..115880638,+p6@Msi1
Mm9::chr5:115882029..115882049,+p@chr5:115882029..115882049
+
Mm9::chr5:115886517..115886540,-p@chr5:115886517..115886540
-
Mm9::chr5:115893184..115893197,+p@chr5:115893184..115893197
+
Mm9::chr5:117041481..117041492,-p11@Srrm4
Mm9::chr5:125784846..125784855,-p16@Scarb1
Mm9::chr5:141041014..141041026,-p1@Grifin
Mm9::chr5:144741948..144741974,+p1@Rsph10b2
Mm9::chr5:35742609..35742618,-p@chr5:35742609..35742618
-
Mm9::chr5:4799092..4799097,-p@chr5:4799092..4799097
-
Mm9::chr6:115162924..115162933,+p@chr6:115162924..115162933
+
Mm9::chr6:115712340..115712362,-p6@Tmem40
Mm9::chr6:115712364..115712398,-p2@Tmem40
Mm9::chr6:124790059..124790070,-p3@Gnb3
Mm9::chr6:125640390..125640399,+p6@Ano2
Mm9::chr6:148844696..148844710,-p1@Caprin2
Mm9::chr6:30125815..30125835,+p@chr6:30125815..30125835
+
Mm9::chr6:85969237..85969247,+p@chr6:85969237..85969247
+
Mm9::chr6:87130760..87130762,-p@chr6:87130760..87130762
-
Mm9::chr7:109374326..109374337,+p11@Pgap2
Mm9::chr7:137864276..137864322,-p@chr7:137864276..137864322
-
Mm9::chr7:140922511..140922518,-p13@Dhx32
Mm9::chr7:150735149..150735160,-p3@Nap1l4
Mm9::chr7:16458536..16458543,-p@chr7:16458536..16458543
-
Mm9::chr7:28282354..28282365,+p@chr7:28282354..28282365
+
Mm9::chr7:29477835..29477853,+p4@Fbxo27
Mm9::chr7:29477874..29477889,+p6@Fbxo27
Mm9::chr7:30182697..30182728,-p@chr7:30182697..30182728
-
Mm9::chr7:30290582..30290598,-p12@Sipa1l3
Mm9::chr7:50685437..50685452,+p2@Lim2
Mm9::chr7:50685462..50685484,+p1@Lim2
Mm9::chr7:72070468..72070497,-p7@Fam189a1
Mm9::chr7:74865070..74865075,-p@chr7:74865070..74865075
-
Mm9::chr8:107795971..107795988,+p@chr8:107795971..107795988
+
Mm9::chr8:118237412..118237420,-p@chr8:118237412..118237420
-
Mm9::chr8:72460396..72460409,-p@chr8:72460396..72460409
-
Mm9::chr8:85372013..85372020,-p@chr8:85372013..85372020
-
Mm9::chr9:103382554..103382593,-p1@Bfsp2
Mm9::chr9:103382596..103382599,-p5@Bfsp2
Mm9::chr9:103382634..103382645,-p2@Bfsp2
Mm9::chr9:103382666..103382678,-p4@Bfsp2
Mm9::chr9:106355572..106355607,+p@chr9:106355572..106355607
+
Mm9::chr9:115367410..115367415,-p@chr9:115367410..115367415
-
Mm9::chr9:62358393..62358412,-p5@Coro2b
Mm9::chr9:63969308..63969311,+p6@Lctl
Mm9::chr9:65208856..65208863,+p2@Gm514
Mm9::chr9:83034786..83034792,-p@chr9:83034786..83034792
-
Mm9::chr9:94434202..94434229,-p@chr9:94434202..94434229
-
Mm9::chrX:34712436..34712444,+p@chrX:34712436..34712444
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005212structural constituent of eye lens4.11466020467449e-27
GO:0007423sensory organ development1.62980638952321e-15
GO:0001654eye development3.95907961543224e-09
GO:0007601visual perception1.45215011567418e-07
GO:0050953sensory perception of light stimulus1.45215011567418e-07
GO:0048856anatomical structure development1.49085116853024e-06
GO:0043010camera-type eye development7.23467980032763e-06
GO:0048513organ development1.2006488370482e-05
GO:0048731system development4.09711254815237e-05
GO:0007275multicellular organismal development0.000165782708021624
GO:0002088lens development in camera-type eye0.000199265764057703
GO:0032502developmental process0.000277685306689043
GO:0042803protein homodimerization activity0.00052656893383641
GO:0006583melanin biosynthetic process from tyrosine0.00494743505034512
GO:0032501multicellular organismal process0.00510220334480083
GO:0042802identical protein binding0.00543504223972365
GO:0046983protein dimerization activity0.00982244140145151
GO:0042438melanin biosynthetic process0.0108520841059974
GO:0006582melanin metabolic process0.0108520841059974
GO:0018298protein-chromophore linkage0.0125761207296899
GO:0006570tyrosine metabolic process0.0169203505274675
GO:0042462eye photoreceptor cell development0.018806719076944
GO:0001754eye photoreceptor cell differentiation0.0236302765880239
GO:0042461photoreceptor cell development0.0256155598903208
GO:0046530photoreceptor cell differentiation0.037679085308237
GO:0007602phototransduction0.0393223031830384
GO:0009584detection of visible light0.0393223031830384
GO:0050962detection of light stimulus during sensory perception0.0393223031830384
GO:0050908detection of light stimulus during visual perception0.0393223031830384
GO:0009072aromatic amino acid family metabolic process0.0393223031830384
GO:0005921gap junction0.0393223031830384
GO:0009583detection of light stimulus0.0393223031830384
GO:0046148pigment biosynthetic process0.0393223031830384
GO:0004167dopachrome isomerase activity0.0393223031830384
GO:0021902commitment of a neuronal cell to a specific type of neuron in the forebrain0.0393223031830384
GO:0043437butanoic acid metabolic process0.0393223031830384
GO:0021877forebrain neuron fate commitment0.0393223031830384
GO:0000072M phase specific microtubule process0.0393223031830384
GO:0043438acetoacetic acid metabolic process0.0393223031830384
GO:0006198cAMP catabolic process0.0393223031830384
GO:0048066pigmentation during development0.0437382348457268
GO:0042440pigment metabolic process0.0487134585644161



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:57&oldid=2149343"