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MCL coexpression mm9:86

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:115889275..115889292,-p9@Gm12657
p9@Gm6421
p9@Gm6749
p9@Gm7194
p9@Gm7227
p9@H3f3a
p9@H3f3b
p9@H3f3c
Mm9::chr11:4733080..4733087,-p13@Nf2
Mm9::chr11:59337226..59337229,-p@chr11:59337226..59337229
-
Mm9::chr11:68310150..68310165,+p@chr11:68310150..68310165
+
Mm9::chr11:69479320..69479327,-p@chr11:69479320..69479327
-
Mm9::chr11:82776772..82776796,+p@chr11:82776772..82776796
+
Mm9::chr11:83342723..83342749,-p@chr11:83342723..83342749
-
Mm9::chr11:83343982..83344002,-p2@Ccl5
Mm9::chr11:83344007..83344035,-p1@Ccl5
Mm9::chr11:83344152..83344166,-p5@Ccl5
Mm9::chr11:8475592..8475595,-p@chr11:8475592..8475595
-
Mm9::chr12:104680569..104680588,-p@chr12:104680569..104680588
-
Mm9::chr12:106633788..106633790,+p@chr12:106633788..106633790
+
Mm9::chr12:21379342..21379353,-p4@Adam17
Mm9::chr12:21379387..21379407,-p1@Adam17
Mm9::chr12:3347796..3347799,-p@chr12:3347796..3347799
-
Mm9::chr12:3873135..3873145,+p@chr12:3873135..3873145
+
Mm9::chr12:74454130..74454136,+p@chr12:74454130..74454136
+
Mm9::chr13:103496369..103496373,+p@chr13:103496369..103496373
+
Mm9::chr13:103496926..103496929,+p@chr13:103496926..103496929
+
Mm9::chr13:103496979..103496992,+p@chr13:103496979..103496992
+
Mm9::chr13:103497005..103497018,+p@chr13:103497005..103497018
+
Mm9::chr13:103497023..103497030,+p@chr13:103497023..103497030
+
Mm9::chr13:20988377..20988387,+p@chr13:20988377..20988387
+
Mm9::chr13:56274518..56274522,-p@chr13:56274518..56274522
-
Mm9::chr13:76099911..76099914,+p@chr13:76099911..76099914
+
Mm9::chr13:93962194..93962218,-p3@Papd4
Mm9::chr14:103412087..103412104,+p@chr14:103412087..103412104
+
Mm9::chr14:103412110..103412119,+p@chr14:103412110..103412119
+
Mm9::chr14:103446224..103446237,+p1@Irg1
Mm9::chr14:59984271..59984298,-p1@D14Ertd668e
Mm9::chr15:6519558..6519565,+p@chr15:6519558..6519565
+
Mm9::chr15:74789551..74789596,+p@chr15:74789551..74789596
+
Mm9::chr15:74789635..74789644,+p@chr15:74789635..74789644
+
Mm9::chr15:78391431..78391478,-p@chr15:78391431..78391478
-
Mm9::chr15:78391654..78391663,-p@chr15:78391654..78391663
-
Mm9::chr15:78446356..78446382,+p@chr15:78446356..78446382
+
Mm9::chr16:37884149..37884164,+p@chr16:37884149..37884164
+
Mm9::chr16:44106307..44106309,-p@chr16:44106307..44106309
-
Mm9::chr16:77302229..77302237,+p@chr16:77302229..77302237
+
Mm9::chr16:93833516..93833522,+p@chr16:93833516..93833522
+
Mm9::chr16:97684510..97684515,-p1@Mx1
Mm9::chr17:25270386..25270405,+p2@Clcn7
Mm9::chr17:25273605..25273609,+p6@Clcn7
Mm9::chr17:31251474..31251478,+p@chr17:31251474..31251478
+
Mm9::chr17:35185378..35185397,-p@chr17:35185378..35185397
-
Mm9::chr17:47532314..47532327,-p@chr17:47532314..47532327
-
Mm9::chr17:47532347..47532365,-p@chr17:47532347..47532365
-
Mm9::chr17:57497995..57498014,+p2@Emr1
Mm9::chr17:57498105..57498146,+p1@Emr1
Mm9::chr17:57501115..57501124,+p@chr17:57501115..57501124
+
Mm9::chr19:10059393..10059419,+p@chr19:10059393..10059419
+
Mm9::chr19:11679204..11679214,-p4@Ms4a6d
Mm9::chr19:11679223..11679238,-p3@Ms4a6d
Mm9::chr19:11679239..11679256,-p2@Ms4a6d
Mm9::chr19:11679258..11679283,-p1@Ms4a6d
Mm9::chr19:11679298..11679307,-p5@Ms4a6d
Mm9::chr19:11679318..11679323,-p6@Ms4a6d
Mm9::chr19:3376383..3376420,+p@chr19:3376383..3376420
+
Mm9::chr19:34644769..34644786,+p@chr19:34644769..34644786
+
Mm9::chr19:34658018..34658023,+p1@Ifit3
Mm9::chr19:61300490..61300509,-p@chr19:61300490..61300509
-
Mm9::chr19:61300512..61300533,-p@chr19:61300512..61300533
-
Mm9::chr1:173159807..173159816,-p@chr1:173159807..173159816
-
Mm9::chr1:173159841..173159858,-p@chr1:173159841..173159858
-
Mm9::chr1:173159948..173159963,-p@chr1:173159948..173159963
-
Mm9::chr1:173159965..173159982,-p@chr1:173159965..173159982
-
Mm9::chr1:174405502..174405515,+p2@Slamf9
Mm9::chr1:174405518..174405543,+p1@Slamf9
Mm9::chr1:175697076..175697110,-p2@Ifi204
Mm9::chr1:175843035..175843063,-p1@Mnda
Mm9::chr1:175843064..175843069,-p5@Mnda
Mm9::chr1:175843121..175843130,-p4@Mnda
Mm9::chr1:74441254..74441265,-p@chr1:74441254..74441265
-
Mm9::chr2:126905973..126905984,+p5@Blvra
Mm9::chr2:126905988..126905998,+p7@Blvra
Mm9::chr2:130912020..130912045,-p1@Siglec1
Mm9::chr2:144163172..144163181,+p@chr2:144163172..144163181
+
Mm9::chr2:160190321..160190364,-p@chr2:160190321..160190364
-
Mm9::chr2:166885917..166885930,-p9@Znfx1
Mm9::chr2:166885947..166885956,-p13@Znfx1
Mm9::chr2:166888107..166888224,-p1@Znfx1
Mm9::chr2:26207754..26207757,-p3@Dnlz
Mm9::chr2:91042949..91042955,+p2@Acp2
Mm9::chr2:91046614..91046632,+p@chr2:91046614..91046632
+
Mm9::chr2:91046666..91046683,+p@chr2:91046666..91046683
+
Mm9::chr3:129672975..129673048,-p1@Ccdc109b
Mm9::chr3:142283611..142283629,+p2@Gbp2
Mm9::chr3:142283650..142283668,+p3@Gbp2
Mm9::chr3:142283686..142283697,+p5@Gbp2
Mm9::chr3:142283703..142283714,+p4@Gbp2
Mm9::chr3:151394747..151394780,-p@chr3:151394747..151394780
-
Mm9::chr3:151412841..151412883,-p1@Ifi44
Mm9::chr3:79283596..79283600,-p@chr3:79283596..79283600
-
Mm9::chr3:88425125..88425136,+p5@Arhgef2
Mm9::chr3:95358394..95358404,+p@chr3:95358394..95358404
+
Mm9::chr3:96097876..96097908,-p1@Fcgr1
Mm9::chr3:96097919..96097924,-p2@Fcgr1
Mm9::chr4:124385594..124385598,+p@chr4:124385594..124385598
+
Mm9::chr4:132409323..132409326,-p@chr4:132409323..132409326
-
Mm9::chr4:136685291..136685295,+p@chr4:136685291..136685295
+
Mm9::chr4:19969161..19969179,+p3@Ggh
Mm9::chr4:40186779..40186799,-p2@Ddx58
Mm9::chr4:43467454..43467459,-p4@Cd72
p4@LOC100504743
Mm9::chr5:115347779..115347835,+p2@Oasl2
Mm9::chr5:121337607..121337621,-p1@Oas1g
Mm9::chr5:121357519..121357542,-p1@Oas1a
Mm9::chr5:143666316..143666327,-p@chr5:143666316..143666327
-
Mm9::chr5:145888788..145888807,+p@chr5:145888788..145888807
+
Mm9::chr5:145888852..145888868,+p@chr5:145888852..145888868
+
Mm9::chr5:145888886..145888903,+p@chr5:145888886..145888903
+
Mm9::chr6:116583427..116583433,-p@chr6:116583427..116583433
-
Mm9::chr6:122527924..122527962,-p@chr6:122527924..122527962
-
Mm9::chr6:122528009..122528020,-p@chr6:122528009..122528020
-
Mm9::chr6:122528069..122528079,-p@chr6:122528069..122528079
-
Mm9::chr6:122798286..122798297,-p@chr6:122798286..122798297
-
Mm9::chr6:122805870..122805874,-p@chr6:122805870..122805874
-
Mm9::chr6:122871823..122871883,+p1@Clec4a1
Mm9::chr6:122902702..122902715,+p2@Clec4a3
Mm9::chr6:122902719..122902781,+p1@Clec4a3
Mm9::chr6:123073532..123073546,+p5@Clec4a2
Mm9::chr6:91708611..91708632,+p@chr6:91708611..91708632
+
Mm9::chr7:128207682..128207698,-p@chr7:128207682..128207698
-
Mm9::chr7:128207732..128207737,-p@chr7:128207732..128207737
-
Mm9::chr7:128207758..128207768,-p@chr7:128207758..128207768
-
Mm9::chr7:128207799..128207810,-p@chr7:128207799..128207810
-
Mm9::chr7:135282667..135282669,+p@chr7:135282667..135282669
+
Mm9::chr7:148195551..148195580,-p@chr7:148195551..148195580
-
Mm9::chr7:148195584..148195606,-p@chr7:148195584..148195606
-
Mm9::chr7:148195612..148195622,-p@chr7:148195612..148195622
-
Mm9::chr7:148195637..148195649,-p@chr7:148195637..148195649
-
Mm9::chr7:148452314..148452329,-p1@Irf7
Mm9::chr7:25877597..25877616,-p@chr7:25877597..25877616
-
Mm9::chr7:52972437..52972463,-p@chr7:52972437..52972463
-
Mm9::chr7:53174716..53174729,-p@chr7:53174716..53174729
-
Mm9::chr7:53967438..53967455,+p@chr7:53967438..53967455
+
Mm9::chr7:53967613..53967621,-p@chr7:53967613..53967621
-
Mm9::chr7:79587689..79587690,+p@chr7:79587689..79587690
+
Mm9::chr9:37046383..37046386,-p@chr9:37046383..37046386
-
Mm9::chr9:37063014..37063027,-p2@Slc37a2
Mm9::chr9:94670628..94670629,+p@chr9:94670628..94670629
+
Mm9::chrX:103798795..103798824,-p2@Cysltr1
Mm9::chrX:163645214..163645226,-p@chrX:163645214..163645226
-
Mm9::chrX:9038929..9038952,-p@chrX:9038929..9038952
-
Mm9::chrX:9046562..9046572,-p4@Cybb
Mm9::chrX:9046606..9046630,-p3@Cybb


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0006955immune response0.00258691088099285
GO:00017302'-5'-oligoadenylate synthetase activity0.00324955216675001
GO:0002376immune system process0.0161953302503577
GO:0009615response to virus0.0184468511552957
GO:0051707response to other organism0.0375680241250299
GO:0005529sugar binding0.044586278054749
GO:0009607response to biotic stimulus0.044586278054749
GO:0051704multi-organism process0.044586278054749
GO:0017050D-erythro-sphingosine kinase activity0.044586278054749
GO:0006669sphinganine-1-phosphate biosynthetic process0.044586278054749
GO:0006127glycerophosphate shuttle0.044586278054749
GO:0019543propionate catabolic process0.044586278054749
GO:0015168glycerol transmembrane transporter activity0.044586278054749
GO:0046149pigment catabolic process0.044586278054749
GO:0015665alcohol transmembrane transporter activity0.044586278054749
GO:0019541propionate metabolic process0.044586278054749
GO:0015169glycerol-3-phosphate transmembrane transporter activity0.044586278054749
GO:0046511sphinganine biosynthetic process0.044586278054749
GO:0015794glycerol-3-phosphate transport0.044586278054749
GO:0048525negative regulation of viral reproduction0.044586278054749
GO:0042167heme catabolic process0.044586278054749
GO:00475472-methylcitrate dehydratase activity0.044586278054749
GO:0015793glycerol transport0.044586278054749
GO:0015166polyol transmembrane transporter activity0.044586278054749
GO:0030246carbohydrate binding0.0447124860592755



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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