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MCL coexpression mm9:814

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Phase1 CAGE Peaks

 Short description
Mm9::chr13:105018882..105018908,-p1@Ppwd1
Mm9::chr17:33822331..33822355,-p1@Hnrnpm
Mm9::chr17:56723930..56723991,-p1@Safb2
Mm9::chr3:66789622..66789662,+p2@Rsrc1
Mm9::chr5:114221652..114221668,-p1@Sart3
Mm9::chr5:130007098..130007128,+p1@Sfswap
Mm9::chr7:130267686..130267737,+p1@Tnrc6a
Mm9::chr7:52651042..52651089,-p1@Snrnp70
Mm9::chrX:159198320..159198347,+p2@Rbbp7


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0016070RNA metabolic process0.0150867558753302
GO:0005634nucleus0.0150867558753302
GO:0003723RNA binding0.0150867558753302
GO:0010467gene expression0.0150867558753302
GO:0003676nucleic acid binding0.0150867558753302
GO:0005681spliceosome0.0150867558753302
GO:0043229intracellular organelle0.0150867558753302
GO:0043226organelle0.0150867558753302
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0178250023094147
GO:0016581NuRD complex0.0257457024294881
GO:0044424intracellular part0.035962871102759
GO:0044428nuclear part0.035962871102759
GO:0005622intracellular0.0388715845836407
GO:0044446intracellular organelle part0.0388715845836407
GO:0044422organelle part0.0388715845836407
GO:0006396RNA processing0.0388715845836407
GO:0043283biopolymer metabolic process0.0388715845836407
GO:0043231intracellular membrane-bound organelle0.0388715845836407
GO:0043227membrane-bound organelle0.0388715845836407
GO:0000118histone deacetylase complex0.0403579234012077



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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