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MCL coexpression mm9:2602

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:90545781..90545820,+p1@Ikbip
Mm9::chr10:90545826..90545848,+p2@Ikbip
Mm9::chr11:120434136..120434156,-p2@P4hb


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0019511peptidyl-proline hydroxylation0.00177505067660111
GO:0031545peptidyl-proline 4-dioxygenase activity0.00177505067660111
GO:0018401peptidyl-proline hydroxylation to 4-hydroxy-L-proline0.00177505067660111
GO:00194714-hydroxyproline metabolic process0.00177505067660111
GO:0004656procollagen-proline 4-dioxygenase activity0.00177505067660111
GO:0018208peptidyl-proline modification0.00197227852955679
GO:0019798procollagen-proline dioxygenase activity0.00207089245603463
GO:0031543peptidyl-proline dioxygenase activity0.00207089245603463
GO:0016864intramolecular oxidoreductase activity, transposing S-S bonds0.00207089245603463
GO:0003756protein disulfide isomerase activity0.00207089245603463
GO:0016862intramolecular oxidoreductase activity, interconverting keto- and enol-groups0.00215157657769831
GO:0016706oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors0.00616337040486496
GO:0045454cell redox homeostasis0.00908656893974376
GO:0016860intramolecular oxidoreductase activity0.00908656893974376
GO:0046483heterocycle metabolic process0.0130170382950748
GO:0006575amino acid derivative metabolic process0.0160863967566975
GO:0018193peptidyl-amino acid modification0.0161842855807748
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen0.0205445680162165
GO:0016853isomerase activity0.0221176949386011
GO:0005792microsome0.0221176949386011
GO:0042598vesicular fraction0.0221176949386011
GO:0019725cellular homeostasis0.0283739161183965
GO:0006519amino acid and derivative metabolic process0.0362727746957618
GO:0042592homeostatic process0.0388144414616776
GO:0009308amine metabolic process0.0388144414616776
GO:0006807nitrogen compound metabolic process0.0401662108230891
GO:0005624membrane fraction0.0488686791212404



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
multi-cellular organism8.86e-07333


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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